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The map label for this gene is ybeY [C]

Identifier: 42522997

GI number: 42522997

Start: 1408515

End: 1408967

Strand: Direct

Name: ybeY [C]

Synonym: Bd1487

Alternate gene names: 42522997

Gene position: 1408515-1408967 (Clockwise)

Preceding gene: 42522996

Following gene: 42522998

Centisome position: 37.23

GC content: 49.01

Gene sequence:

>453_bases
ATGGAAGTTTTAATCGTCAATGAATCCAAACACGCAGCCCCACGCAAGTTCATCCAAACCTGGATGCAGCTTGTGGTGAC
AGAGCTAAAGCGTAAAAAAGTGCTGAAGGCTGAGCAGGCCCGTCGGGAACTGACGCTGGTGTTTTTGGATAAAAAACCCG
CGCAGAAAATCAATATGGAGTTTCGGGGTAAGAACTACGCCACGGATGTTTTGAGTTTTGACTCGATGGATCCGGGGTCT
TTGGGGGAGCTTGTTTTGTGCCCCGAGGTTTTAAAGCGTCAATCCAAAGAGCATGGACTCACGTATCAGCAGGAGCTGGG
TTATATGCTGCTTCATGGGGTGCTGCACTTGTTGGGTTATGACCACGAGACCAGTGAGGCCGAGGCACTGGAAATGTTCG
GCATTCAGGATGCGGCTTTCGAAGTCCTTTTGAAAAAAGTTTCCGCCAAATAA

Upstream 100 bases:

>100_bases
GCATCCTTCTGGGTATCTATCACCAGCGTATTGATTATCCTCGCAGTGCCGGGGGTGGTTTGGGTGACGTGGGTCAAACC
ACGCCATCGCAGGGTTAGTC

Downstream 100 bases:

>100_bases
GGCGTCTTTTCCCTCTAAAATTGACATGAGAAATGCAAACCTCCCGGAGGGACCAAAAGGGACCCTCTGCGTCCTCGGTT
TTGTCTAAAGTTTGAACGAT

Product: metal-dependent hydrolase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MEVLIVNESKHAAPRKFIQTWMQLVVTELKRKKVLKAEQARRELTLVFLDKKPAQKINMEFRGKNYATDVLSFDSMDPGS
LGELVLCPEVLKRQSKEHGLTYQQELGYMLLHGVLHLLGYDHETSEAEALEMFGIQDAAFEVLLKKVSAK

Sequences:

>Translated_150_residues
MEVLIVNESKHAAPRKFIQTWMQLVVTELKRKKVLKAEQARRELTLVFLDKKPAQKINMEFRGKNYATDVLSFDSMDPGS
LGELVLCPEVLKRQSKEHGLTYQQELGYMLLHGVLHLLGYDHETSEAEALEMFGIQDAAFEVLLKKVSAK
>Mature_150_residues
MEVLIVNESKHAAPRKFIQTWMQLVVTELKRKKVLKAEQARRELTLVFLDKKPAQKINMEFRGKNYATDVLSFDSMDPGS
LGELVLCPEVLKRQSKEHGLTYQQELGYMLLHGVLHLLGYDHETSEAEALEMFGIQDAAFEVLLKKVSAK

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=109, Percent_Identity=34.8623853211009, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BDEBA (Q6MMY3)

Other databases:

- EMBL:   BX842650
- RefSeq:   NP_968377.1
- ProteinModelPortal:   Q6MMY3
- SMR:   Q6MMY3
- GeneID:   2735557
- GenomeReviews:   BX842601_GR
- KEGG:   bba:Bd1487
- NMPDR:   fig|264462.1.peg.1347
- HOGENOM:   HBG734136
- OMA:   LMEEDVY
- BioCyc:   BBAC264462:BD1487-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17145; Mature: 17145

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVLIVNESKHAAPRKFIQTWMQLVVTELKRKKVLKAEQARRELTLVFLDKKPAQKINME
CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHCCEE
FRGKNYATDVLSFDSMDPGSLGELVLCPEVLKRQSKEHGLTYQQELGYMLLHGVLHLLGY
ECCCCHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
DHETSEAEALEMFGIQDAAFEVLLKKVSAK
CCCCCHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEVLIVNESKHAAPRKFIQTWMQLVVTELKRKKVLKAEQARRELTLVFLDKKPAQKINME
CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHCCEE
FRGKNYATDVLSFDSMDPGSLGELVLCPEVLKRQSKEHGLTYQQELGYMLLHGVLHLLGY
ECCCCHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
DHETSEAEALEMFGIQDAAFEVLLKKVSAK
CCCCCHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA