| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is yhjG [H]
Identifier: 42522969
GI number: 42522969
Start: 1377260
End: 1378672
Strand: Direct
Name: yhjG [H]
Synonym: Bd1456
Alternate gene names: 42522969
Gene position: 1377260-1378672 (Clockwise)
Preceding gene: 42522968
Following gene: 42522971
Centisome position: 36.41
GC content: 50.32
Gene sequence:
>1413_bases ATGAGCCCGCAAGTTGTTGATCTTGTCATTGTCGGCGCGGGACCGGTCGGATTGATGTGTGCTTATCTTGCGAAGCTTTG CGGGATGAGCACTGTGATTGTTGATAAATCCGAGGGACCACTGCAAGTGGGGCGCGCGGATGCATTGAACGCCAGGACTT TGCAGCTTTTGGAAGTGGGTAAATTGTTTGACCAGCTTTATCCGTTGGGAAAGCCCTGCAATACAAGTTCTGTATGGGCT GATGGAAAGTTTCTTTCCCGCCAGTCTTCTTGGTGGGACGAGCTTGAGGGGTGTTTTCATAAGCACTTTCTGATGCTGGG GCAGTCTTTTGTTGAAAAGCTGCTGGATGAAAAACTGACCCTTTCAGGCGCCGCTGTTCGCCGTTCCACGGTGATTAAAG ATGTCGAGGTTCTTCAGGACAACTGCCTGACGACGTTGTCTTCCGGTGAAAAGATACAATCCCGTTATGTTATTGGTGCC GATGGTTCCCGCTCGTTTGTACGTGAAAAGTTCAAGGTGCCTTTTGAAATCGTCAGACCCCAGATTGTCTGGGCGGTGCT TGACGGTGTCGTTGAAACGGACTTTCCAAAAGTGCCCGAAATCATCGTCTTTCAGGCAGACACTTCGGACGTGGCGTGGA TTCCTCGCGAAGGGGACATTGATCGTTTCTATGTCCGAATGGACACCACAGAGTTTACTTTGGAAGAAGCTGTTGCAAAA ATCAATCGTGCGATCAAGCCCCATGTTCTGGGCTTTAAAAAGATGGAGTGGTTTTCACAGTTTTCGGTGAAGGAGTCCGT GGCTGAAAAGTTCTTCATTCAGGATCGGGTGTTTCTTGTTGGCGATGCCAGCCATATTCACTCGGTCAACGGCGGGCAGG GGCTGAACACGGGGCTGGCTGATGCTTTCAATCTGATCTGGAAGTTGAACATGACTTTGAATCACGGGGCTTCGTTGGAT CTGCTGCAAAGCTACGAATCTGAACGCAAACCCGTTGCTTTAAGTGTCATCGAGGCTTCGGGGGAACTTGTTCGTTCAAC CAAGTATTCTGCGAATGGGACTCATGCCGAGGATTATGTGCGCATCGTGCAAAAACGCGCGGGAAATATCACGGGCATGG GGATTCGTTACGCAGGTGAGGGGCTTATCGGGTCCCGGTTGTATGACTCTGAGGTCCGCTTCGGGTCCGAGACGGTTCGG CTGTACTCTTTGTTGAATTATTCCAAGTATACGTTGTTTGTCTTTGGGGATGTGGAGCTTGATTTTGAGTTGCCGGAGTA TGTTCAGCTTGTTGTCGTTGGCTCTTCGGATTCTGTCTATGTCGGGCAGGCGGTGTTGGTGAGACCGGATGCTTATATTG AATCAACGGTCTCGTTGGGTCGGGCTCGGGAGCTTCTGTCGTCTTTTATTTAG
Upstream 100 bases:
>100_bases ACGGACGCGAAGCGTTTACCTCGAAATCCCCGCGTCACCTGCAGCGAGTGCAGGTGCAAAGCAGTCCGCCGTTTGATAAC CCGGGCCTGGAATCGTACAA
Downstream 100 bases:
>100_bases AGGTCTAAATCCAGTTCGTAGATGCCTCGGGCGGCGAGGACTTCCTGGGTGGAGTTTAGTTTTCTTACTTCGGTGAGTTC CCAGGAGTAGTAGCCGGGTT
Product: hypothetical protein
Products: H2O; 3-(2,3-dihydroxyphenyl)propionate; NAD [C]
Alternate protein names: NA
Number of amino acids: Translated: 470; Mature: 469
Protein sequence:
>470_residues MSPQVVDLVIVGAGPVGLMCAYLAKLCGMSTVIVDKSEGPLQVGRADALNARTLQLLEVGKLFDQLYPLGKPCNTSSVWA DGKFLSRQSSWWDELEGCFHKHFLMLGQSFVEKLLDEKLTLSGAAVRRSTVIKDVEVLQDNCLTTLSSGEKIQSRYVIGA DGSRSFVREKFKVPFEIVRPQIVWAVLDGVVETDFPKVPEIIVFQADTSDVAWIPREGDIDRFYVRMDTTEFTLEEAVAK INRAIKPHVLGFKKMEWFSQFSVKESVAEKFFIQDRVFLVGDASHIHSVNGGQGLNTGLADAFNLIWKLNMTLNHGASLD LLQSYESERKPVALSVIEASGELVRSTKYSANGTHAEDYVRIVQKRAGNITGMGIRYAGEGLIGSRLYDSEVRFGSETVR LYSLLNYSKYTLFVFGDVELDFELPEYVQLVVVGSSDSVYVGQAVLVRPDAYIESTVSLGRARELLSSFI
Sequences:
>Translated_470_residues MSPQVVDLVIVGAGPVGLMCAYLAKLCGMSTVIVDKSEGPLQVGRADALNARTLQLLEVGKLFDQLYPLGKPCNTSSVWA DGKFLSRQSSWWDELEGCFHKHFLMLGQSFVEKLLDEKLTLSGAAVRRSTVIKDVEVLQDNCLTTLSSGEKIQSRYVIGA DGSRSFVREKFKVPFEIVRPQIVWAVLDGVVETDFPKVPEIIVFQADTSDVAWIPREGDIDRFYVRMDTTEFTLEEAVAK INRAIKPHVLGFKKMEWFSQFSVKESVAEKFFIQDRVFLVGDASHIHSVNGGQGLNTGLADAFNLIWKLNMTLNHGASLD LLQSYESERKPVALSVIEASGELVRSTKYSANGTHAEDYVRIVQKRAGNITGMGIRYAGEGLIGSRLYDSEVRFGSETVR LYSLLNYSKYTLFVFGDVELDFELPEYVQLVVVGSSDSVYVGQAVLVRPDAYIESTVSLGRARELLSSFI >Mature_469_residues SPQVVDLVIVGAGPVGLMCAYLAKLCGMSTVIVDKSEGPLQVGRADALNARTLQLLEVGKLFDQLYPLGKPCNTSSVWAD GKFLSRQSSWWDELEGCFHKHFLMLGQSFVEKLLDEKLTLSGAAVRRSTVIKDVEVLQDNCLTTLSSGEKIQSRYVIGAD GSRSFVREKFKVPFEIVRPQIVWAVLDGVVETDFPKVPEIIVFQADTSDVAWIPREGDIDRFYVRMDTTEFTLEEAVAKI NRAIKPHVLGFKKMEWFSQFSVKESVAEKFFIQDRVFLVGDASHIHSVNGGQGLNTGLADAFNLIWKLNMTLNHGASLDL LQSYESERKPVALSVIEASGELVRSTKYSANGTHAEDYVRIVQKRAGNITGMGIRYAGEGLIGSRLYDSEVRFGSETVRL YSLLNYSKYTLFVFGDVELDFELPEYVQLVVVGSSDSVYVGQAVLVRPDAYIESTVSLGRARELLSSFI
Specific function: 3-hydroxyphenylpropionate degradation. [C]
COG id: COG0654
COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pheA/tfdB FAD monooxygenase family [H]
Homologues:
Organism=Escherichia coli, GI1786543, Length=349, Percent_Identity=27.5071633237822, Blast_Score=105, Evalue=8e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002938 - InterPro: IPR003042 [H]
Pfam domain/function: PF01494 FAD_binding_3 [H]
EC number: 1.14.13.- [C]
Molecular weight: Translated: 52205; Mature: 52074
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPQVVDLVIVGAGPVGLMCAYLAKLCGMSTVIVDKSEGPLQVGRADALNARTLQLLEVG CCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCCCCHHHHHHHHHH KLFDQLYPLGKPCNTSSVWADGKFLSRQSSWWDELEGCFHKHFLMLGQSFVEKLLDEKLT HHHHHHCCCCCCCCCCCEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LSGAAVRRSTVIKDVEVLQDNCLTTLSSGEKIQSRYVIGADGSRSFVREKFKVPFEIVRP CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCEEEEECCCCHHHHHHHHCCCHHHHHH QIVWAVLDGVVETDFPKVPEIIVFQADTSDVAWIPREGDIDRFYVRMDTTEFTLEEAVAK HHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCCCCCEEEEEECCHHHHHHHHHHH INRAIKPHVLGFKKMEWFSQFSVKESVAEKFFIQDRVFLVGDASHIHSVNGGQGLNTGLA HHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHCCCCCCCCCCCHHH DAFNLIWKLNMTLNHGASLDLLQSYESERKPVALSVIEASGELVRSTKYSANGTHAEDYV HHHHHHEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCCCCHHHHH RIVQKRAGNITGMGIRYAGEGLIGSRLYDSEVRFGSETVRLYSLLNYSKYTLFVFGDVEL HHHHHHCCCCEEEEEEEECCCCCCCCEECCHHHCCHHHHHHHHHHCCCEEEEEEEEEEEE DFELPEYVQLVVVGSSDSVYVGQAVLVRPDAYIESTVSLGRARELLSSFI CCCCCCEEEEEEECCCCCEEECEEEEECCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SPQVVDLVIVGAGPVGLMCAYLAKLCGMSTVIVDKSEGPLQVGRADALNARTLQLLEVG CCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCCCCHHHHHHHHHH KLFDQLYPLGKPCNTSSVWADGKFLSRQSSWWDELEGCFHKHFLMLGQSFVEKLLDEKLT HHHHHHCCCCCCCCCCCEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LSGAAVRRSTVIKDVEVLQDNCLTTLSSGEKIQSRYVIGADGSRSFVREKFKVPFEIVRP CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCEEEEECCCCHHHHHHHHCCCHHHHHH QIVWAVLDGVVETDFPKVPEIIVFQADTSDVAWIPREGDIDRFYVRMDTTEFTLEEAVAK HHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCCCCCEEEEEECCHHHHHHHHHHH INRAIKPHVLGFKKMEWFSQFSVKESVAEKFFIQDRVFLVGDASHIHSVNGGQGLNTGLA HHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHCCCCCCCCCCCHHH DAFNLIWKLNMTLNHGASLDLLQSYESERKPVALSVIEASGELVRSTKYSANGTHAEDYV HHHHHHEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCCCCHHHHH RIVQKRAGNITGMGIRYAGEGLIGSRLYDSEVRFGSETVRLYSLLNYSKYTLFVFGDVEL HHHHHHCCCCEEEEEEEECCCCCCCCEECCHHHCCHHHHHHHHHHCCCEEEEEEEEEEEE DFELPEYVQLVVVGSSDSVYVGQAVLVRPDAYIESTVSLGRARELLSSFI CCCCCCEEEEEEECCCCCEEECEEEEECCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 3-(3-hydroxyphenyl)propionate; NADH; O2 [C]
Specific reaction: 3-(3-hydroxyphenyl)propionate + NADH + O2 = H2O + 3-(2,3-dihydroxyphenyl)propionate + NAD [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]