Click here to switch to the map view.

The map label for this gene is sodC [H]

Identifier: 42522919

GI number: 42522919

Start: 1326143

End: 1326685

Strand: Direct

Name: sodC [H]

Synonym: Bd1401

Alternate gene names: 42522919

Gene position: 1326143-1326685 (Clockwise)

Preceding gene: 42522917

Following gene: 42522921

Centisome position: 35.06

GC content: 50.09

Gene sequence:

>543_bases
ATGTACAAAGCCCTTAGTAAAGCTCTGGTGCTGACTCTTCTTGGTGCAAGCTCTGTATCTGCGCAGCAGGACCCTGTAGC
CATTATCATTCGCAATGCCAAGGGTGAACAGGTGGGAAATGCGACGCTCACAGATGTGACCAACGGGATGCGTATTCAGA
TGGAACTGCAAAATCTTCCGCCGGGAGAAAAAGCCTTCCACATTCATGAAAAGGGGCTTTGTACGGCTCCTGATTTCAAG
TCAGCCGGAGGCCACTTTAATCCGGACAAAAAGAAGCATGGCCACAAGGTCAAAGGCGGACCCCACGCAGGAGATTTCAG
CAATATTGTCGTGAAAGAAGATGGGACGGCATCAGTGGATGTGGTTAATCCTATGTTGACCGTCCATGCGGGGAAAAATT
CGGTGATCTCCAATGAGGGGACCTCGATTGTGATTCATGCCAAAGCGGATGATTATAAATCCCAGCCTGCAGGCGATGCC
GGAGATCGGATCGCCTGTGGAGAAATTAAAACTCCGCCGGAGTCAAAGCCTGTGATCAAGTAA

Upstream 100 bases:

>100_bases
ACTAAGCCTAGGTTAAATCTGGTAAATTACAAGGTATTCTATTTTGGTGATTCCTCAAAACCGCCTTAACGTATTTTGAT
ATTTTCGCGGGAGGAATTCT

Downstream 100 bases:

>100_bases
TTACTTGGCAAAGGCGTAAATCAAACTTCCGCCCTTAAGCATGCCGATGACTTTGTCACGCAGGTGATTTGCCACTGCCG
GGCAACCCCAGCTGCGCCCT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MYKALSKALVLTLLGASSVSAQQDPVAIIIRNAKGEQVGNATLTDVTNGMRIQMELQNLPPGEKAFHIHEKGLCTAPDFK
SAGGHFNPDKKKHGHKVKGGPHAGDFSNIVVKEDGTASVDVVNPMLTVHAGKNSVISNEGTSIVIHAKADDYKSQPAGDA
GDRIACGEIKTPPESKPVIK

Sequences:

>Translated_180_residues
MYKALSKALVLTLLGASSVSAQQDPVAIIIRNAKGEQVGNATLTDVTNGMRIQMELQNLPPGEKAFHIHEKGLCTAPDFK
SAGGHFNPDKKKHGHKVKGGPHAGDFSNIVVKEDGTASVDVVNPMLTVHAGKNSVISNEGTSIVIHAKADDYKSQPAGDA
GDRIACGEIKTPPESKPVIK
>Mature_180_residues
MYKALSKALVLTLLGASSVSAQQDPVAIIIRNAKGEQVGNATLTDVTNGMRIQMELQNLPPGEKAFHIHEKGLCTAPDFK
SAGGHFNPDKKKHGHKVKGGPHAGDFSNIVVKEDGTASVDVVNPMLTVHAGKNSVISNEGTSIVIHAKADDYKSQPAGDA
GDRIACGEIKTPPESKPVIK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=126, Percent_Identity=35.7142857142857, Blast_Score=72, Evalue=3e-13,
Organism=Escherichia coli, GI1787934, Length=172, Percent_Identity=31.9767441860465, Blast_Score=86, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17554806, Length=142, Percent_Identity=35.2112676056338, Blast_Score=76, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI71981876, Length=127, Percent_Identity=37.007874015748, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71981879, Length=127, Percent_Identity=37.007874015748, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17537871, Length=123, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322564, Length=118, Percent_Identity=40.6779661016949, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI45551081, Length=185, Percent_Identity=32.4324324324324, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24652737, Length=185, Percent_Identity=32.4324324324324, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI85725006, Length=185, Percent_Identity=32.4324324324324, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI116007680, Length=185, Percent_Identity=32.4324324324324, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281363087, Length=119, Percent_Identity=38.655462184874, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24652342, Length=119, Percent_Identity=38.655462184874, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI17136496, Length=126, Percent_Identity=36.5079365079365, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 18938; Mature: 18938

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKALSKALVLTLLGASSVSAQQDPVAIIIRNAKGEQVGNATLTDVTNGMRIQMELQNLP
CCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCC
PGEKAFHIHEKGLCTAPDFKSAGGHFNPDKKKHGHKVKGGPHAGDFSNIVVKEDGTASVD
CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCEEE
VVNPMLTVHAGKNSVISNEGTSIVIHAKADDYKSQPAGDAGDRIACGEIKTPPESKPVIK
EECCEEEEECCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MYKALSKALVLTLLGASSVSAQQDPVAIIIRNAKGEQVGNATLTDVTNGMRIQMELQNLP
CCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCC
PGEKAFHIHEKGLCTAPDFKSAGGHFNPDKKKHGHKVKGGPHAGDFSNIVVKEDGTASVD
CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCEEE
VVNPMLTVHAGKNSVISNEGTSIVIHAKADDYKSQPAGDAGDRIACGEIKTPPESKPVIK
EECCEEEEECCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]