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The map label for this gene is ybjZ [C]

Identifier: 42522660

GI number: 42522660

Start: 1045458

End: 1046723

Strand: Direct

Name: ybjZ [C]

Synonym: Bd1112

Alternate gene names: 42522660

Gene position: 1045458-1046723 (Clockwise)

Preceding gene: 42522659

Following gene: 42522663

Centisome position: 27.64

GC content: 52.84

Gene sequence:

>1266_bases
GTGATGGTCTTTTTGAAGTTGGCAATCAAATCCCTGAAGAATCGGGCGTTCGCAACAACGCTGACGGTGATCTCCATTGC
ATTGAGTGTGGCTTTGCTTCTGACTGTCGAGCGCGCCAAGCGGGCCGCGGAAGAGGGCTTCACGCAAACCATCAGCAAAA
CCGATCTGATCGTCGGCGCACGCAGCGGTCCGCTGCAGTTGATTCTGTACACTGTCTTCAATATGGGGAATGCCACTCAT
AACATTTCCTATGAAACCTATGAAAAAGTAAAAGCACACCCGGCGATTGAATGGACTATTCCTTATTCATTGGGCGATGG
CCATCGCGGTTTCCGCGTGGTGGGTACGACGCAAGACTTCTTCAAACACTATCATTATCGTGGTGACCAGCAGGTGAAGT
TTGCTCAAGGCAAAGAGTTTGCTGACATCTGGGATGTGGTGGTCGGTGCGGATGTAGCCCGTAAGCTGAAATACAGTCTG
GGAGATCGCATTGTGGTCGCTCACGGTGTGACCAAGGGCGAAGGCATCTTGCAGCACGATGACCGTCCGTTTGTGATTTC
CGGTATTCTTGAGCCGACCGGCACGCCATTGGACCGTGCGGTTTACATGTCCCTGCAGGGGATGGAAGCTTTGCACGTGG
ACTGGCAAGATGGCGCCGCTCCGGCAATGGACAAAGTCATTCCGCGTGAACAGCTGACGAATGAATTGAAGGTTCACACT
ATCACGGCGTTCTTTGTGGGGGCCAAGTCCCGCATCGAAACCTTGAAGCTTCAGCGCGAAATCAACACTTATGAAGGCGA
GCCATTGCTGGCGATCATTCCGGGGGCGACATTGAGCGAACTTTGGAATGGATTGTCTTACGTTGAAGGCGTCCTTCGCA
TGATTTCCTGGATGGTTGTGGCCGTGGGCTTCATGGCCATGCTGATTGCCTTGACGACAACACTGAATGAGCGCCGTCGT
GAAATGGCGATCTTGCGTGCGGTGGGTGCGAAATCCAATCAGATTCTGGGGCTATTGGTGTTTGAATCCGCACTTTTGAC
GGCAGTGGGTGTGGCGTTGGGGCTTGTGACATCCTGGGGTTTGATCGCGGTGTTGAAACCGTGGATTGAAACCGAGTTTG
GTCTGTATCTGGTGGGCCCATGGGTCACTCGTTATGAATTGATGTATCTGATCATCACTCTGGTTGGCGGGACGCTGATT
GGTTTGATTCCGGCTTTGCGTGCGCAGAAGCTGGCCCTGAAAGACGGACTGAGCGTTCGTATCTAA

Upstream 100 bases:

>100_bases
CCGAGCTTTATGGCACGACTGTCGTGTTTGTTTCCCATGACCGCAGCATAGAAAAACTCTTTACGCGTTCAATCTCCTTA
GAATCCATTAACAAGGTTGT

Downstream 100 bases:

>100_bases
AAAAATAAAAAACCGCAGGCGTTGCGACCTGCGGTTTCATGTCTCTTAGGTTTTGGAATTATCTACTGAACAATTTGTGC
AAGCTGGGCACCTCCTACAG

Product: peptide ABC transporter permease

Products: NA

Alternate protein names: Peptide ABC Transporter Permease; Efflux ABC Transporter Permease Protein; ABC Efflux Transporter Permease Protein; ABC Transporter Permease; ABC-Type Transport System Permease Component; Peptide ABC Transporter Permease Component; Transmembrane Protein; Transmembrane Transporter Component; ABC Transporter Membrane Protein; Permease Component Protein; ABC Transporter Permease Protein; ABC Transport System Permease Protein; Antimicrobial Peptide ABC Transporter Permease; ABC Transporter Transmembrane Permease; ABC-Type Transport System Permease

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MMVFLKLAIKSLKNRAFATTLTVISIALSVALLLTVERAKRAAEEGFTQTISKTDLIVGARSGPLQLILYTVFNMGNATH
NISYETYEKVKAHPAIEWTIPYSLGDGHRGFRVVGTTQDFFKHYHYRGDQQVKFAQGKEFADIWDVVVGADVARKLKYSL
GDRIVVAHGVTKGEGILQHDDRPFVISGILEPTGTPLDRAVYMSLQGMEALHVDWQDGAAPAMDKVIPREQLTNELKVHT
ITAFFVGAKSRIETLKLQREINTYEGEPLLAIIPGATLSELWNGLSYVEGVLRMISWMVVAVGFMAMLIALTTTLNERRR
EMAILRAVGAKSNQILGLLVFESALLTAVGVALGLVTSWGLIAVLKPWIETEFGLYLVGPWVTRYELMYLIITLVGGTLI
GLIPALRAQKLALKDGLSVRI

Sequences:

>Translated_421_residues
MMVFLKLAIKSLKNRAFATTLTVISIALSVALLLTVERAKRAAEEGFTQTISKTDLIVGARSGPLQLILYTVFNMGNATH
NISYETYEKVKAHPAIEWTIPYSLGDGHRGFRVVGTTQDFFKHYHYRGDQQVKFAQGKEFADIWDVVVGADVARKLKYSL
GDRIVVAHGVTKGEGILQHDDRPFVISGILEPTGTPLDRAVYMSLQGMEALHVDWQDGAAPAMDKVIPREQLTNELKVHT
ITAFFVGAKSRIETLKLQREINTYEGEPLLAIIPGATLSELWNGLSYVEGVLRMISWMVVAVGFMAMLIALTTTLNERRR
EMAILRAVGAKSNQILGLLVFESALLTAVGVALGLVTSWGLIAVLKPWIETEFGLYLVGPWVTRYELMYLIITLVGGTLI
GLIPALRAQKLALKDGLSVRI
>Mature_421_residues
MMVFLKLAIKSLKNRAFATTLTVISIALSVALLLTVERAKRAAEEGFTQTISKTDLIVGARSGPLQLILYTVFNMGNATH
NISYETYEKVKAHPAIEWTIPYSLGDGHRGFRVVGTTQDFFKHYHYRGDQQVKFAQGKEFADIWDVVVGADVARKLKYSL
GDRIVVAHGVTKGEGILQHDDRPFVISGILEPTGTPLDRAVYMSLQGMEALHVDWQDGAAPAMDKVIPREQLTNELKVHT
ITAFFVGAKSRIETLKLQREINTYEGEPLLAIIPGATLSELWNGLSYVEGVLRMISWMVVAVGFMAMLIALTTTLNERRR
EMAILRAVGAKSNQILGLLVFESALLTAVGVALGLVTSWGLIAVLKPWIETEFGLYLVGPWVTRYELMYLIITLVGGTLI
GLIPALRAQKLALKDGLSVRI

Specific function: Unknown

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46467; Mature: 46467

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVFLKLAIKSLKNRAFATTLTVISIALSVALLLTVERAKRAAEEGFTQTISKTDLIVGA
CEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
RSGPLQLILYTVFNMGNATHNISYETYEKVKAHPAIEWTIPYSLGDGHRGFRVVGTTQDF
CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEECCHHH
FKHYHYRGDQQVKFAQGKEFADIWDVVVGADVARKLKYSLGDRIVVAHGVTKGEGILQHD
HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECC
DRPFVISGILEPTGTPLDRAVYMSLQGMEALHVDWQDGAAPAMDKVIPREQLTNELKVHT
CCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHCCCHHHHHCHHHHEE
ITAFFVGAKSRIETLKLQREINTYEGEPLLAIIPGATLSELWNGLSYVEGVLRMISWMVV
EEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
AVGFMAMLIALTTTLNERRREMAILRAVGAKSNQILGLLVFESALLTAVGVALGLVTSWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LIAVLKPWIETEFGLYLVGPWVTRYELMYLIITLVGGTLIGLIPALRAQKLALKDGLSVR
HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEC
I
C
>Mature Secondary Structure
MMVFLKLAIKSLKNRAFATTLTVISIALSVALLLTVERAKRAAEEGFTQTISKTDLIVGA
CEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
RSGPLQLILYTVFNMGNATHNISYETYEKVKAHPAIEWTIPYSLGDGHRGFRVVGTTQDF
CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEECCHHH
FKHYHYRGDQQVKFAQGKEFADIWDVVVGADVARKLKYSLGDRIVVAHGVTKGEGILQHD
HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECC
DRPFVISGILEPTGTPLDRAVYMSLQGMEALHVDWQDGAAPAMDKVIPREQLTNELKVHT
CCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHCCCHHHHHCHHHHEE
ITAFFVGAKSRIETLKLQREINTYEGEPLLAIIPGATLSELWNGLSYVEGVLRMISWMVV
EEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
AVGFMAMLIALTTTLNERRREMAILRAVGAKSNQILGLLVFESALLTAVGVALGLVTSWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LIAVLKPWIETEFGLYLVGPWVTRYELMYLIITLVGGTLIGLIPALRAQKLALKDGLSVR
HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEC
I
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA