| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522587
Identifier: 42522587
GI number: 42522587
Start: 975217
End: 976155
Strand: Direct
Name: 42522587
Synonym: Bd1028
Alternate gene names: NA
Gene position: 975217-976155 (Clockwise)
Preceding gene: 42522586
Following gene: 42522588
Centisome position: 25.78
GC content: 49.95
Gene sequence:
>939_bases ATGCCAAAAAGCCGGCTTCCAGGTGATGGACGCAAAACCCGTCGATCCCCTGTAAAGAAAAAGACGACGAAGAAGACCGC AGTTAAAAAGACTGCGGCTTCGGCGACGCATGCCGGAGATGTTCATCGTTTCATCGGTCTGTCCCTGGGGGGCGGTAAAA CCGACAAGGCCTGTCTGGCCGTTCTGGAATACTATCCCAAACACAAAAAAATCTTCCTGTCGCGTTTGGTGGAAAAAATC AAAAGTGACGAAGTCCATTCTGCTGATTTCAAAATTCAGGAAGTCATTCGTCAGTATCACAATGAAATTGATCTGATCGC ATTTGATGTGCCATTCCGTTTGCCTGTGTGTTTGCAGTCGGAAGACTGCTGCAACAGCATTGAGGACTGCAAAAAGCCCC ACGTCAAATGGATGTGGGAGTACACCCGCAAACTGCATAAAAAGAAGAAACCACGCAAGCTGTTTACGCCGTATACTCAG CGCTGTGTTGAGATGTATGTGTCTTCCGAACTGGAAGAGCCCTTTATTCTGCAGCACGCGATGGGGGCGAATACGGCCCC CTTGTTGGCGCGGGCGATGTACTTGCAGCGCGGACTGAAAGCAAAGTGCATCGAAGTGTTTCCTAAGCTTTCCGTATGGC GCTTGGGGAGATCGCTGAATGTGATGAAAAGTCATCTGCGCTTTCATAAACACGCCATCGGCGGGGATGAAAGTCGTCGC GAAATTCTGAGCGCTTTAAGCACGCACAACGTCGCGTTCGTGTACGACCAGGATGTGAAGCTGATGATTGAAAACAATCA CGCCTTTGAGGCATTTATATGTGCTTTGACGGCCTTCCTAAGTTTCAAAGGCAGCACCGAACCTCGTCCCGACGGTTTTC CACCCAACGAAGACTGGATCGAATTTCCCCGTGTCAACGTACGCTGGGAAGGATTCTAG
Upstream 100 bases:
>100_bases TGCAGAATGGGGCTGAGGCTGTTAAAATTTGTGGAGCTGGGGGCGGGGGCTGTGTGCTGGTCTGGTGTCCTCCGGATAAA CGTGAGGGAGTAGCCAACGC
Downstream 100 bases:
>100_bases TCGGCCCCGCCCAGCTGCGGGGCTAGCCTCAGTCAACAACTCCGCGACACGCCATCCGGGCTCTGCCGTGGCCCGCGCTT CGCGCGGGTGCGCGCCGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MPKSRLPGDGRKTRRSPVKKKTTKKTAVKKTAASATHAGDVHRFIGLSLGGGKTDKACLAVLEYYPKHKKIFLSRLVEKI KSDEVHSADFKIQEVIRQYHNEIDLIAFDVPFRLPVCLQSEDCCNSIEDCKKPHVKWMWEYTRKLHKKKKPRKLFTPYTQ RCVEMYVSSELEEPFILQHAMGANTAPLLARAMYLQRGLKAKCIEVFPKLSVWRLGRSLNVMKSHLRFHKHAIGGDESRR EILSALSTHNVAFVYDQDVKLMIENNHAFEAFICALTAFLSFKGSTEPRPDGFPPNEDWIEFPRVNVRWEGF
Sequences:
>Translated_312_residues MPKSRLPGDGRKTRRSPVKKKTTKKTAVKKTAASATHAGDVHRFIGLSLGGGKTDKACLAVLEYYPKHKKIFLSRLVEKI KSDEVHSADFKIQEVIRQYHNEIDLIAFDVPFRLPVCLQSEDCCNSIEDCKKPHVKWMWEYTRKLHKKKKPRKLFTPYTQ RCVEMYVSSELEEPFILQHAMGANTAPLLARAMYLQRGLKAKCIEVFPKLSVWRLGRSLNVMKSHLRFHKHAIGGDESRR EILSALSTHNVAFVYDQDVKLMIENNHAFEAFICALTAFLSFKGSTEPRPDGFPPNEDWIEFPRVNVRWEGF >Mature_311_residues PKSRLPGDGRKTRRSPVKKKTTKKTAVKKTAASATHAGDVHRFIGLSLGGGKTDKACLAVLEYYPKHKKIFLSRLVEKIK SDEVHSADFKIQEVIRQYHNEIDLIAFDVPFRLPVCLQSEDCCNSIEDCKKPHVKWMWEYTRKLHKKKKPRKLFTPYTQR CVEMYVSSELEEPFILQHAMGANTAPLLARAMYLQRGLKAKCIEVFPKLSVWRLGRSLNVMKSHLRFHKHAIGGDESRRE ILSALSTHNVAFVYDQDVKLMIENNHAFEAFICALTAFLSFKGSTEPRPDGFPPNEDWIEFPRVNVRWEGF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35915; Mature: 35784
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKSRLPGDGRKTRRSPVKKKTTKKTAVKKTAASATHAGDVHRFIGLSLGGGKTDKACLA CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHH VLEYYPKHKKIFLSRLVEKIKSDEVHSADFKIQEVIRQYHNEIDLIAFDVPFRLPVCLQS HHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEECC EDCCNSIEDCKKPHVKWMWEYTRKLHKKKKPRKLFTPYTQRCVEMYVSSELEEPFILQHA HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHCCCCCHHHHHH MGANTAPLLARAMYLQRGLKAKCIEVFPKLSVWRLGRSLNVMKSHLRFHKHAIGGDESRR CCCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHH EILSALSTHNVAFVYDQDVKLMIENNHAFEAFICALTAFLSFKGSTEPRPDGFPPNEDWI HHHHHHHHCCEEEEEECCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH EFPRVNVRWEGF HCCCCCEEECCC >Mature Secondary Structure PKSRLPGDGRKTRRSPVKKKTTKKTAVKKTAASATHAGDVHRFIGLSLGGGKTDKACLA CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHH VLEYYPKHKKIFLSRLVEKIKSDEVHSADFKIQEVIRQYHNEIDLIAFDVPFRLPVCLQS HHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEECC EDCCNSIEDCKKPHVKWMWEYTRKLHKKKKPRKLFTPYTQRCVEMYVSSELEEPFILQHA HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHCCCCCHHHHHH MGANTAPLLARAMYLQRGLKAKCIEVFPKLSVWRLGRSLNVMKSHLRFHKHAIGGDESRR CCCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHH EILSALSTHNVAFVYDQDVKLMIENNHAFEAFICALTAFLSFKGSTEPRPDGFPPNEDWI HHHHHHHHCCEEEEEECCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH EFPRVNVRWEGF HCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA