Click here to switch to the map view.

The map label for this gene is hspC [H]

Identifier: 42522487

GI number: 42522487

Start: 871050

End: 871511

Strand: Direct

Name: hspC [H]

Synonym: Bd0917

Alternate gene names: 42522487

Gene position: 871050-871511 (Clockwise)

Preceding gene: 42522486

Following gene: 42522488

Centisome position: 23.03

GC content: 45.67

Gene sequence:

>462_bases
ATGGCGAATCTACCTAATCCATGGCGTGAAAGATCTTTGGCTAATCCCTTCAGAGAATTTGGCCGACACCAGGAGCGTAT
TGACCGATTGTTGAATGAGCTGATGGAGCTGAGAAGCGGGACCCTGGGTGAAGACATGAGTCTTATGCCTTCCAGCGAAC
TCGTCGAAGAAGAAAAGAATTACCTTCTGAAAGTCGACCTTCCTGGAATCAAAAAAGAAGATGTGAAGGTTGAGGTGGAA
GGGGATCGTCTGACCATACGGGCTGAAAGACGATCCGAGAAAGAGGAAAAGAGTAAAAAGAGATACTTCTCTGAAATCTC
TTACGGATCCTGCATGCGAAGCTTTGCTCTGCCCCAGTCGATCGACGAAAAGAAAGTGGATGCAAAGTTTGAAAATGGGG
TGTTGTCAGTGACAATTCCAAAAACCACAGAATCAAAAAGCAAGCAGATCTCGGTTCATTGA

Upstream 100 bases:

>100_bases
TTCTGGCGTGGTCCCGCAGATTGTTTCAATGCATTCCAGGATGAATCATATTTCCTTCTGTTTTTGCAGTGCCATACTCT
ACGTTTAAAAAGGAGTGTTT

Downstream 100 bases:

>100_bases
TTCAAAATGGGCCGGATGTTGCTTGCAATAGCCGGCTCTTCATTTCCGGAGAGTTCTATGAAAAAGAAAATAGGCCTCTT
TCTTATTTTTGTCGGCTCTT

Product: small heat shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MANLPNPWRERSLANPFREFGRHQERIDRLLNELMELRSGTLGEDMSLMPSSELVEEEKNYLLKVDLPGIKKEDVKVEVE
GDRLTIRAERRSEKEEKSKKRYFSEISYGSCMRSFALPQSIDEKKVDAKFENGVLSVTIPKTTESKSKQISVH

Sequences:

>Translated_153_residues
MANLPNPWRERSLANPFREFGRHQERIDRLLNELMELRSGTLGEDMSLMPSSELVEEEKNYLLKVDLPGIKKEDVKVEVE
GDRLTIRAERRSEKEEKSKKRYFSEISYGSCMRSFALPQSIDEKKVDAKFENGVLSVTIPKTTESKSKQISVH
>Mature_152_residues
ANLPNPWRERSLANPFREFGRHQERIDRLLNELMELRSGTLGEDMSLMPSSELVEEEKNYLLKVDLPGIKKEDVKVEVEG
DRLTIRAERRSEKEEKSKKRYFSEISYGSCMRSFALPQSIDEKKVDAKFENGVLSVTIPKTTESKSKQISVH

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 17717; Mature: 17586

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLPNPWRERSLANPFREFGRHQERIDRLLNELMELRSGTLGEDMSLMPSSELVEEEKN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
YLLKVDLPGIKKEDVKVEVEGDRLTIRAERRSEKEEKSKKRYFSEISYGSCMRSFALPQS
EEEEEECCCCCCCCEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
IDEKKVDAKFENGVLSVTIPKTTESKSKQISVH
CCHHHHCHHHCCCEEEEEECCCCCCCCCEECCC
>Mature Secondary Structure 
ANLPNPWRERSLANPFREFGRHQERIDRLLNELMELRSGTLGEDMSLMPSSELVEEEKN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
YLLKVDLPGIKKEDVKVEVEGDRLTIRAERRSEKEEKSKKRYFSEISYGSCMRSFALPQS
EEEEEECCCCCCCCEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
IDEKKVDAKFENGVLSVTIPKTTESKSKQISVH
CCHHHHCHHHCCCEEEEEECCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA