Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

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The map label for this gene is catD

Identifier: 42522480

GI number: 42522480

Start: 861695

End: 862396

Strand: Direct

Name: catD

Synonym: Bd0910

Alternate gene names: NA

Gene position: 861695-862396 (Clockwise)

Preceding gene: 42522479

Following gene: 42522481

Centisome position: 22.78

GC content: 52.42

Gene sequence:

>702_bases
ATGATGCCACTTGAAACAATCGTATTGCTGCCGGGATTTTTGTGTGATGAGCGCCTGTGGGCCCCTCTGGTGCCGGTTTT
TTCCGAACGCTACAATGTTCGCGTGGTGGATTTGAAGCATCCTCAGAATCTGGATGCCATGATTGAAGAAGTGGGAAAGA
CTTCCGACCAAGCTTTTCATCTGGTGGGCTTTTCCATGGGCGGGTATATCGCCGAAACTTTTGCCACCCGTTTTCCTGAA
CGAGTGCTGTCTTTGTCTTTGGTGGCGGCCAGCGTTGGGGCCTTGTCTGAAAAAACGCGGGCGGCACGCCTGAAGATGGT
GGGACTTTTAAGACGTGGAAAGTACAACGGCATTTCGGAAAAAGAGATGGATCGTTATATCCACCCCGATTTTCTGAAGG
ACCCGCAAGTGGTCGGCCCCATCATGCAGATGAGTGCCGACTTTTCCTCTGAACAGTATATCAACCAAACCTTGGCCACT
GTGGACCGAATCGACAAAGGCGCAGCCTTGCAAGAACTGTCGTTCCCGGTTCTGATCGTGGCGGCGGCCAATGATCGGGT
GGTTCCGTTGGAGTCCTTGAAGAATCGTCATGCCCAGATATCACGCTCTAAGTTCCGGGTGATTGATCATTGCGGGCATT
ATGTGCCGTTGGAACAGCCAGCCGAACTGGGTCAAGCCGTTCTTGATTTTGTCGGGCGGTGA

Upstream 100 bases:

>100_bases
AAAAAGAATTTTGGCCCGCGCCTCAGAAAGTTGTATGATTCTGAATTCGGTCAAAACGGAGAAGGTGTTTGAATTTCATG
TGTCTTAAAAGGATCGGGGC

Downstream 100 bases:

>100_bases
GTGGTGAAACAAACGTGGGGCATCATTGGCTTGGGTTGGTTGGGGCAGAAGCTTTCTGAACACTTAAGTCAAAAAGGCAT
CGAAAACTGGGGCACCCGCA

Product: putative hydrolase

Products: NA

Alternate protein names: Hydrolase; Alpha/Beta Hydrolase Fold; Alpha/Beta Hydrolase; Hydrolase Alpha/Beta Fold Family; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase Protein; Alpha/Beta Hydrolase Family Protein; Hydrolase Or Acyltransferase; Alpha/Beta Family Hydrolase; Hydrolase Alpha/Beta Hydrolase Fold Family Protein; Lipolytic; 3-Oxoadipate Enol-Lactonase; Hydrolase Or Acyltransferase-Like Protein; Hydrolase Alpha; Alpha/Beta Hydrolase Superfamily Protein; 2-Hydroxy-6-Ketonona-2 4-Dienedioic Acid Hydrolase; Alpha/Beta Hydrolase Fold Domain-Containing Protein; Alpha/Beta Hydrolase Fold-Containing Protein; Alpha/Beta Superfamily Hydrolase

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MMPLETIVLLPGFLCDERLWAPLVPVFSERYNVRVVDLKHPQNLDAMIEEVGKTSDQAFHLVGFSMGGYIAETFATRFPE
RVLSLSLVAASVGALSEKTRAARLKMVGLLRRGKYNGISEKEMDRYIHPDFLKDPQVVGPIMQMSADFSSEQYINQTLAT
VDRIDKGAALQELSFPVLIVAAANDRVVPLESLKNRHAQISRSKFRVIDHCGHYVPLEQPAELGQAVLDFVGR

Sequences:

>Translated_233_residues
MMPLETIVLLPGFLCDERLWAPLVPVFSERYNVRVVDLKHPQNLDAMIEEVGKTSDQAFHLVGFSMGGYIAETFATRFPE
RVLSLSLVAASVGALSEKTRAARLKMVGLLRRGKYNGISEKEMDRYIHPDFLKDPQVVGPIMQMSADFSSEQYINQTLAT
VDRIDKGAALQELSFPVLIVAAANDRVVPLESLKNRHAQISRSKFRVIDHCGHYVPLEQPAELGQAVLDFVGR
>Mature_233_residues
MMPLETIVLLPGFLCDERLWAPLVPVFSERYNVRVVDLKHPQNLDAMIEEVGKTSDQAFHLVGFSMGGYIAETFATRFPE
RVLSLSLVAASVGALSEKTRAARLKMVGLLRRGKYNGISEKEMDRYIHPDFLKDPQVVGPIMQMSADFSSEQYINQTLAT
VDRIDKGAALQELSFPVLIVAAANDRVVPLESLKNRHAQISRSKFRVIDHCGHYVPLEQPAELGQAVLDFVGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26024; Mature: 26024

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPLETIVLLPGFLCDERLWAPLVPVFSERYNVRVVDLKHPQNLDAMIEEVGKTSDQAFH
CCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEE
LVGFSMGGYIAETFATRFPERVLSLSLVAASVGALSEKTRAARLKMVGLLRRGKYNGISE
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
KEMDRYIHPDFLKDPQVVGPIMQMSADFSSEQYINQTLATVDRIDKGAALQELSFPVLIV
HHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEE
AAANDRVVPLESLKNRHAQISRSKFRVIDHCGHYVPLEQPAELGQAVLDFVGR
EECCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MMPLETIVLLPGFLCDERLWAPLVPVFSERYNVRVVDLKHPQNLDAMIEEVGKTSDQAFH
CCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEE
LVGFSMGGYIAETFATRFPERVLSLSLVAASVGALSEKTRAARLKMVGLLRRGKYNGISE
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
KEMDRYIHPDFLKDPQVVGPIMQMSADFSSEQYINQTLATVDRIDKGAALQELSFPVLIV
HHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEE
AAANDRVVPLESLKNRHAQISRSKFRVIDHCGHYVPLEQPAELGQAVLDFVGR
EECCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA