| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is catD
Identifier: 42522480
GI number: 42522480
Start: 861695
End: 862396
Strand: Direct
Name: catD
Synonym: Bd0910
Alternate gene names: NA
Gene position: 861695-862396 (Clockwise)
Preceding gene: 42522479
Following gene: 42522481
Centisome position: 22.78
GC content: 52.42
Gene sequence:
>702_bases ATGATGCCACTTGAAACAATCGTATTGCTGCCGGGATTTTTGTGTGATGAGCGCCTGTGGGCCCCTCTGGTGCCGGTTTT TTCCGAACGCTACAATGTTCGCGTGGTGGATTTGAAGCATCCTCAGAATCTGGATGCCATGATTGAAGAAGTGGGAAAGA CTTCCGACCAAGCTTTTCATCTGGTGGGCTTTTCCATGGGCGGGTATATCGCCGAAACTTTTGCCACCCGTTTTCCTGAA CGAGTGCTGTCTTTGTCTTTGGTGGCGGCCAGCGTTGGGGCCTTGTCTGAAAAAACGCGGGCGGCACGCCTGAAGATGGT GGGACTTTTAAGACGTGGAAAGTACAACGGCATTTCGGAAAAAGAGATGGATCGTTATATCCACCCCGATTTTCTGAAGG ACCCGCAAGTGGTCGGCCCCATCATGCAGATGAGTGCCGACTTTTCCTCTGAACAGTATATCAACCAAACCTTGGCCACT GTGGACCGAATCGACAAAGGCGCAGCCTTGCAAGAACTGTCGTTCCCGGTTCTGATCGTGGCGGCGGCCAATGATCGGGT GGTTCCGTTGGAGTCCTTGAAGAATCGTCATGCCCAGATATCACGCTCTAAGTTCCGGGTGATTGATCATTGCGGGCATT ATGTGCCGTTGGAACAGCCAGCCGAACTGGGTCAAGCCGTTCTTGATTTTGTCGGGCGGTGA
Upstream 100 bases:
>100_bases AAAAAGAATTTTGGCCCGCGCCTCAGAAAGTTGTATGATTCTGAATTCGGTCAAAACGGAGAAGGTGTTTGAATTTCATG TGTCTTAAAAGGATCGGGGC
Downstream 100 bases:
>100_bases GTGGTGAAACAAACGTGGGGCATCATTGGCTTGGGTTGGTTGGGGCAGAAGCTTTCTGAACACTTAAGTCAAAAAGGCAT CGAAAACTGGGGCACCCGCA
Product: putative hydrolase
Products: NA
Alternate protein names: Hydrolase; Alpha/Beta Hydrolase Fold; Alpha/Beta Hydrolase; Hydrolase Alpha/Beta Fold Family; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase Protein; Alpha/Beta Hydrolase Family Protein; Hydrolase Or Acyltransferase; Alpha/Beta Family Hydrolase; Hydrolase Alpha/Beta Hydrolase Fold Family Protein; Lipolytic; 3-Oxoadipate Enol-Lactonase; Hydrolase Or Acyltransferase-Like Protein; Hydrolase Alpha; Alpha/Beta Hydrolase Superfamily Protein; 2-Hydroxy-6-Ketonona-2 4-Dienedioic Acid Hydrolase; Alpha/Beta Hydrolase Fold Domain-Containing Protein; Alpha/Beta Hydrolase Fold-Containing Protein; Alpha/Beta Superfamily Hydrolase
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MMPLETIVLLPGFLCDERLWAPLVPVFSERYNVRVVDLKHPQNLDAMIEEVGKTSDQAFHLVGFSMGGYIAETFATRFPE RVLSLSLVAASVGALSEKTRAARLKMVGLLRRGKYNGISEKEMDRYIHPDFLKDPQVVGPIMQMSADFSSEQYINQTLAT VDRIDKGAALQELSFPVLIVAAANDRVVPLESLKNRHAQISRSKFRVIDHCGHYVPLEQPAELGQAVLDFVGR
Sequences:
>Translated_233_residues MMPLETIVLLPGFLCDERLWAPLVPVFSERYNVRVVDLKHPQNLDAMIEEVGKTSDQAFHLVGFSMGGYIAETFATRFPE RVLSLSLVAASVGALSEKTRAARLKMVGLLRRGKYNGISEKEMDRYIHPDFLKDPQVVGPIMQMSADFSSEQYINQTLAT VDRIDKGAALQELSFPVLIVAAANDRVVPLESLKNRHAQISRSKFRVIDHCGHYVPLEQPAELGQAVLDFVGR >Mature_233_residues MMPLETIVLLPGFLCDERLWAPLVPVFSERYNVRVVDLKHPQNLDAMIEEVGKTSDQAFHLVGFSMGGYIAETFATRFPE RVLSLSLVAASVGALSEKTRAARLKMVGLLRRGKYNGISEKEMDRYIHPDFLKDPQVVGPIMQMSADFSSEQYINQTLAT VDRIDKGAALQELSFPVLIVAAANDRVVPLESLKNRHAQISRSKFRVIDHCGHYVPLEQPAELGQAVLDFVGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26024; Mature: 26024
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMPLETIVLLPGFLCDERLWAPLVPVFSERYNVRVVDLKHPQNLDAMIEEVGKTSDQAFH CCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEE LVGFSMGGYIAETFATRFPERVLSLSLVAASVGALSEKTRAARLKMVGLLRRGKYNGISE EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH KEMDRYIHPDFLKDPQVVGPIMQMSADFSSEQYINQTLATVDRIDKGAALQELSFPVLIV HHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEE AAANDRVVPLESLKNRHAQISRSKFRVIDHCGHYVPLEQPAELGQAVLDFVGR EECCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MMPLETIVLLPGFLCDERLWAPLVPVFSERYNVRVVDLKHPQNLDAMIEEVGKTSDQAFH CCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEE LVGFSMGGYIAETFATRFPERVLSLSLVAASVGALSEKTRAARLKMVGLLRRGKYNGISE EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH KEMDRYIHPDFLKDPQVVGPIMQMSADFSSEQYINQTLATVDRIDKGAALQELSFPVLIV HHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEE AAANDRVVPLESLKNRHAQISRSKFRVIDHCGHYVPLEQPAELGQAVLDFVGR EECCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA