| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522409
Identifier: 42522409
GI number: 42522409
Start: 784600
End: 786723
Strand: Direct
Name: 42522409
Synonym: Bd0834
Alternate gene names: NA
Gene position: 784600-786723 (Clockwise)
Preceding gene: 42522408
Following gene: 42522410
Centisome position: 20.74
GC content: 55.32
Gene sequence:
>2124_bases TTGAGATCGCCGTTAATATTTAGAATTTTCAAAAACAATCAGCTCGTTGGTGTTAAACAGTTCGATCAGGATCAAATCGT GGTCGGACACAATGCTGAAGTGCATCTGGATCTGGATGCCGACGGCGTTTCACCCATTCACTGTCTGATCGAACTTCGTG ACAACGGATGGTATGTCTGTGATTTGGGTTCCTCTCAGGGGACTTTCAAAAACGGGCAGGCTGTTCTGGATGAAGCCATC GCTTCTGGCGATGAAATCGAAGTGGGTCCTTTCCGTATTGCCTTCTTTGTGGGTGTGCCGAAGCCTAAAGTGGTTCCGGG CGCGCCAGCTTCTGAAGCTGTGGCTCCAGTGGCTGAAGTGCCAGCGCCACCTCCGCCAAAGCCGGAGCCCTCCATGCCGC CTGCGGCCGTGGTGAAGACGGAAGAAATCAAAGTCACTCCGGTGATCCCGGCGGTGACTCCGAGCATTCCAGTGGAAGCT CCGAAGGCCGAGGAAAAGCCTGTTCTGACTACGGCTCCGGTAAAACCTGAGATCCGCAAAGAACGCTCTTCTTACAAAAA GGCCAAGAAAAGCAAAACATTCGCTCCTCCAAGCGAGATTCAGAATCTGAAATCGCACCTGAAGCCTGGTAAAGGCACGA CGGTCGAAGTTCTGGTCACCTGGAAAGAGCGCATTCTGACGACTTATCATTTCAAGGGCAACAAAACCATCCGCGTGAAT GCGGGCGGGGACTTGTCTGTGGCTCTTCCTGACGGACTGGTGCCGCGCGGTTATCCGCTGCTGGACATGTCTGCAGGTCT GCGTGTGAACACCACCAACGAGATGGACACCGAAATGGTGATCTCTGGCGGCGTGACCCAGCACGTGGAAGACCTTGCCA AATCCGGCAAGGCACAAAAGGGCGGCAACGGTTACAGTGTGCGCGTGGATCAGAACGAAATGCTGTGTGTGAATCTGCCG GGTGGAAACCTGTGCCTTTACATCCGCTTCGTTCCGCAGGCGCCAACGGTGCCGATGCTTCCAATGATGCTTTCCGGTTC TGAAATGACGGGTTTGGCAATGTCCCTGATTATCGTGGGACTGCTGGCTTTGTATATTTCCGCAACCATTCCGAAAGACT GGCAGGAAAACAAGCAGGAAGAGGTTCAGCGTATTGCCCAGGTGGTGTTCACTAATCCACCGCCGGCGCCAACGCCGACC CCGACGCCTCCTCCACCAGTGCCTCCGACTCCGCCGCCGCAACCGGTGGCGACGCCGACTCCGCCTCCACCTAAGAAAGT GGTTGTGGCTGATGCGAACAAGGAAGCACAGAAAAAAGGAACGACCGGACAGCAGGCTCAGCGTGCCCAAGTGGCGGCAA GAGCCAGCGAAGTGGCTCCGAAGCCCAACGCGAAAGACCGCACCAAGAAGTTCACGTCCACTCGTCAGGGGGGCGCGATC AAAACGGGTAACACGGCCGGTGCGAATGCTCAGTCTTCCAACAAAGATCTTTCCAAAGTGGGTCTGTTCAGCGCCTTCGG TGGCGGTGGCAGCCGCGCCAACATCGACAAAGCCTACTCTGGAGCCGGTGAGGTTCTGGGTATGGCCGACAAGGCGACCG GAACGGCGGGCTTCAATGAAGACCGTGCTGGTGATGATCTGGGATCCAAATTCAAGGATGCCGGAGCTGGTGGAAAAGGG ACCGCAACTCAAGGTATCGCCGGAATCGGCACCAAGGGTCGTGGGTCAGGTCAGGCTGCTTACGGTGCGTCTGAGGGCTT CGGTTCGAAGACCACAGTGGCTATCGAAGGCGGTGGTGCTGAAGAATCCTTCGACGCTACCATTGACAAAGAAGCTATCC GTCGTGTGATCCGCTCTAAACTTAACGAGGTGAAAAGCTGCTACGAGCGGGCTTTGAACACTCTTGAGAAGGGTAAGAAG ATGGAAGGTAAAGTGATTCTTGCTTGGGAGATCATCGAGCGAGGTCAGGCACGCAACGTGAAAGTTGTCGATTCCACACT GGGCAACCCTGGAGTGGAAGAATGTATCCGCCGTCGTCTGGCAAGCTGGGTGTTCCCAGAGCCACCGACCGGAATGACAG CTGAAGTACAGGCGTACCCGTTTGTTTTGAATCAGGCTAATTAA
Upstream 100 bases:
>100_bases AGAAAAACTTCAACTATAAGAGATTGATCAAGTTGAGAGAAAACTTTTTACCCGAGATGAGACGAACAACAGAGGATATC CAGCGGGTCCGGGGTGCTAA
Downstream 100 bases:
>100_bases TTAAAGTTTTTAAGAAGGAGAACTTCCCGTGAACCCAACAGTTACAGTAGACAACATGAATTTCATCCAGCGTGCTTTCG CCGAGGGTGGTTTCGTCATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 707; Mature: 707
Protein sequence:
>707_residues MRSPLIFRIFKNNQLVGVKQFDQDQIVVGHNAEVHLDLDADGVSPIHCLIELRDNGWYVCDLGSSQGTFKNGQAVLDEAI ASGDEIEVGPFRIAFFVGVPKPKVVPGAPASEAVAPVAEVPAPPPPKPEPSMPPAAVVKTEEIKVTPVIPAVTPSIPVEA PKAEEKPVLTTAPVKPEIRKERSSYKKAKKSKTFAPPSEIQNLKSHLKPGKGTTVEVLVTWKERILTTYHFKGNKTIRVN AGGDLSVALPDGLVPRGYPLLDMSAGLRVNTTNEMDTEMVISGGVTQHVEDLAKSGKAQKGGNGYSVRVDQNEMLCVNLP GGNLCLYIRFVPQAPTVPMLPMMLSGSEMTGLAMSLIIVGLLALYISATIPKDWQENKQEEVQRIAQVVFTNPPPAPTPT PTPPPPVPPTPPPQPVATPTPPPPKKVVVADANKEAQKKGTTGQQAQRAQVAARASEVAPKPNAKDRTKKFTSTRQGGAI KTGNTAGANAQSSNKDLSKVGLFSAFGGGGSRANIDKAYSGAGEVLGMADKATGTAGFNEDRAGDDLGSKFKDAGAGGKG TATQGIAGIGTKGRGSGQAAYGASEGFGSKTTVAIEGGGAEESFDATIDKEAIRRVIRSKLNEVKSCYERALNTLEKGKK MEGKVILAWEIIERGQARNVKVVDSTLGNPGVEECIRRRLASWVFPEPPTGMTAEVQAYPFVLNQAN
Sequences:
>Translated_707_residues MRSPLIFRIFKNNQLVGVKQFDQDQIVVGHNAEVHLDLDADGVSPIHCLIELRDNGWYVCDLGSSQGTFKNGQAVLDEAI ASGDEIEVGPFRIAFFVGVPKPKVVPGAPASEAVAPVAEVPAPPPPKPEPSMPPAAVVKTEEIKVTPVIPAVTPSIPVEA PKAEEKPVLTTAPVKPEIRKERSSYKKAKKSKTFAPPSEIQNLKSHLKPGKGTTVEVLVTWKERILTTYHFKGNKTIRVN AGGDLSVALPDGLVPRGYPLLDMSAGLRVNTTNEMDTEMVISGGVTQHVEDLAKSGKAQKGGNGYSVRVDQNEMLCVNLP GGNLCLYIRFVPQAPTVPMLPMMLSGSEMTGLAMSLIIVGLLALYISATIPKDWQENKQEEVQRIAQVVFTNPPPAPTPT PTPPPPVPPTPPPQPVATPTPPPPKKVVVADANKEAQKKGTTGQQAQRAQVAARASEVAPKPNAKDRTKKFTSTRQGGAI KTGNTAGANAQSSNKDLSKVGLFSAFGGGGSRANIDKAYSGAGEVLGMADKATGTAGFNEDRAGDDLGSKFKDAGAGGKG TATQGIAGIGTKGRGSGQAAYGASEGFGSKTTVAIEGGGAEESFDATIDKEAIRRVIRSKLNEVKSCYERALNTLEKGKK MEGKVILAWEIIERGQARNVKVVDSTLGNPGVEECIRRRLASWVFPEPPTGMTAEVQAYPFVLNQAN >Mature_707_residues MRSPLIFRIFKNNQLVGVKQFDQDQIVVGHNAEVHLDLDADGVSPIHCLIELRDNGWYVCDLGSSQGTFKNGQAVLDEAI ASGDEIEVGPFRIAFFVGVPKPKVVPGAPASEAVAPVAEVPAPPPPKPEPSMPPAAVVKTEEIKVTPVIPAVTPSIPVEA PKAEEKPVLTTAPVKPEIRKERSSYKKAKKSKTFAPPSEIQNLKSHLKPGKGTTVEVLVTWKERILTTYHFKGNKTIRVN AGGDLSVALPDGLVPRGYPLLDMSAGLRVNTTNEMDTEMVISGGVTQHVEDLAKSGKAQKGGNGYSVRVDQNEMLCVNLP GGNLCLYIRFVPQAPTVPMLPMMLSGSEMTGLAMSLIIVGLLALYISATIPKDWQENKQEEVQRIAQVVFTNPPPAPTPT PTPPPPVPPTPPPQPVATPTPPPPKKVVVADANKEAQKKGTTGQQAQRAQVAARASEVAPKPNAKDRTKKFTSTRQGGAI KTGNTAGANAQSSNKDLSKVGLFSAFGGGGSRANIDKAYSGAGEVLGMADKATGTAGFNEDRAGDDLGSKFKDAGAGGKG TATQGIAGIGTKGRGSGQAAYGASEGFGSKTTVAIEGGGAEESFDATIDKEAIRRVIRSKLNEVKSCYERALNTLEKGKK MEGKVILAWEIIERGQARNVKVVDSTLGNPGVEECIRRRLASWVFPEPPTGMTAEVQAYPFVLNQAN
Specific function: Unknown
COG id: COG1716
COG function: function code T; FOG: FHA domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74791; Mature: 74791
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: PS50006 FHA_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSPLIFRIFKNNQLVGVKQFDQDQIVVGHNAEVHLDLDADGVSPIHCLIELRDNGWYVC CCCCEEEEEECCCEEEEEEECCCCCEEECCCCEEEEEECCCCCCCEEEEEEEECCCEEEE DLGSSQGTFKNGQAVLDEAIASGDEIEVGPFRIAFFVGVPKPKVVPGAPASEAVAPVAEV ECCCCCCCCCCCHHHHHHHHCCCCCEEECCEEEEEEEECCCCCCCCCCCCHHHHCCHHHC PAPPPPKPEPSMPPAAVVKTEEIKVTPVIPAVTPSIPVEAPKAEEKPVLTTAPVKPEIRK CCCCCCCCCCCCCCHHEEEECCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHH ERSSYKKAKKSKTFAPPSEIQNLKSHLKPGKGTTVEVLVTWKERILTTYHFKGNKTIRVN HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEECCCCEEEEE AGGDLSVALPDGLVPRGYPLLDMSAGLRVNTTNEMDTEMVISGGVTQHVEDLAKSGKAQK CCCCEEEECCCCCCCCCCCEEECCCCCEEECCCCCCCEEEEECCHHHHHHHHHHCCCCCC GGNGYSVRVDQNEMLCVNLPGGNLCLYIRFVPQAPTVPMLPMMLSGSEMTGLAMSLIIVG CCCCEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCCHHEECCCCHHHHHHHHHHHH LLALYISATIPKDWQENKQEEVQRIAQVVFTNPPPAPTPTPTPPPPVPPTPPPQPVATPT HHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PPPPKKVVVADANKEAQKKGTTGQQAQRAQVAARASEVAPKPNAKDRTKKFTSTRQGGAI CCCCCEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCE KTGNTAGANAQSSNKDLSKVGLFSAFGGGGSRANIDKAYSGAGEVLGMADKATGTAGFNE ECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCC DRAGDDLGSKFKDAGAGGKGTATQGIAGIGTKGRGSGQAAYGASEGFGSKTTVAIEGGGA CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC EESFDATIDKEAIRRVIRSKLNEVKSCYERALNTLEKGKKMEGKVILAWEIIERGQARNV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCE KVVDSTLGNPGVEECIRRRLASWVFPEPPTGMTAEVQAYPFVLNQAN EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCC >Mature Secondary Structure MRSPLIFRIFKNNQLVGVKQFDQDQIVVGHNAEVHLDLDADGVSPIHCLIELRDNGWYVC CCCCEEEEEECCCEEEEEEECCCCCEEECCCCEEEEEECCCCCCCEEEEEEEECCCEEEE DLGSSQGTFKNGQAVLDEAIASGDEIEVGPFRIAFFVGVPKPKVVPGAPASEAVAPVAEV ECCCCCCCCCCCHHHHHHHHCCCCCEEECCEEEEEEEECCCCCCCCCCCCHHHHCCHHHC PAPPPPKPEPSMPPAAVVKTEEIKVTPVIPAVTPSIPVEAPKAEEKPVLTTAPVKPEIRK CCCCCCCCCCCCCCHHEEEECCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHH ERSSYKKAKKSKTFAPPSEIQNLKSHLKPGKGTTVEVLVTWKERILTTYHFKGNKTIRVN HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEECCCCEEEEE AGGDLSVALPDGLVPRGYPLLDMSAGLRVNTTNEMDTEMVISGGVTQHVEDLAKSGKAQK CCCCEEEECCCCCCCCCCCEEECCCCCEEECCCCCCCEEEEECCHHHHHHHHHHCCCCCC GGNGYSVRVDQNEMLCVNLPGGNLCLYIRFVPQAPTVPMLPMMLSGSEMTGLAMSLIIVG CCCCEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCCHHEECCCCHHHHHHHHHHHH LLALYISATIPKDWQENKQEEVQRIAQVVFTNPPPAPTPTPTPPPPVPPTPPPQPVATPT HHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PPPPKKVVVADANKEAQKKGTTGQQAQRAQVAARASEVAPKPNAKDRTKKFTSTRQGGAI CCCCCEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCE KTGNTAGANAQSSNKDLSKVGLFSAFGGGGSRANIDKAYSGAGEVLGMADKATGTAGFNE ECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCC DRAGDDLGSKFKDAGAGGKGTATQGIAGIGTKGRGSGQAAYGASEGFGSKTTVAIEGGGA CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC EESFDATIDKEAIRRVIRSKLNEVKSCYERALNTLEKGKKMEGKVILAWEIIERGQARNV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCE KVVDSTLGNPGVEECIRRRLASWVFPEPPTGMTAEVQAYPFVLNQAN EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA