| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is yloN
Identifier: 42522317
GI number: 42522317
Start: 693899
End: 695098
Strand: Direct
Name: yloN
Synonym: Bd0733
Alternate gene names: 42522317
Gene position: 693899-695098 (Clockwise)
Preceding gene: 42522312
Following gene: 42522318
Centisome position: 18.34
GC content: 50.25
Gene sequence:
>1200_bases ATGGAAGCAAACGCCGGCAGCACTCTTGCGCCCGTTAATTATTCTGACGACAACGTCGCCAAACCCCTTGAAAATCAACC TGTCAATTTCTACTCCCTGACACTGGAAGATCTGAAAGCCTATATCAAAAGCAAAGGCAAAGAGCAGTTCCGTGCCCAGC AGATTTTCAAATGGGTTTATGAGCAGCGTGTGACGGATCCGGAACAGATGACCAATCTGTCCAAGGAATTCCGTCAGGAT CTTCCCTCCATGCTTTCTTTCGATCTGCCGCCGGTTCTTCAGCATTTGAAGTCTGTCGATGGCACCCAGAAGTTCCTGTT CGACATGAAAGACGGTATGTCCGTTGAAGCGGTGGTGATTCCTTCCGAAGACCGCCTGACTTTGTGTATTTCCTCTGAAG TGGGCTGTAACATGGCCTGCAAATTCTGCTTCACTGGCAAACAAAAACTGAAACGCCGTTTGCGCACAGAAGACATCGTG GGTCAGTTCATGCAGGTTCATGATCGTCTGGCTGAAGGTCAGCGCATCACCAATATCGTATTCATGGGTATGGGCGAGCC GCTGGACAATCCGGAAGCAGTCTTCAAAACCATCGACGTGATTCATTCTCCGTGGGGTATCAACCTGTCCCGCAAGAAGA TCACGGTCTCCACTTCCGGTATCGTGCCGGAAATGTGGCGTGTGGCTGATGCGAAAGTGCGTCTGGCAGTCAGCCTGAAC GGTCCTAACGATGAAATCCGTTCTCAGGTGATGCCGATCAATAAACGCTGGGATACCAAGGCGTTGCTGGAAGCTTGTAA AGAGCACTACCGTGTTTCCAAAGACAAGATCACTTTCGAGTACGTGTTGCTGAAAGGGATCACCGATCAGTTGGAGCACG CCCGTCAGCTGGTGAAACTGGTAAAAGACGTTCCATGCAAAATCAATATCATCCCGTTCAACGAACACCCGGGTTCTGGT TACGAGCGTCCTGATGACGACACAATCCAGGCATTCCATACGGAATTGATGAACCTGGGCGCACACGTTCTTCTTCGTCG TTCCATGGGTCGTGACATCTTCGCGGCTTGCGGTCAGTTGACCACGGTGAAAGAGCGTCCTCAGACGATGGATATTTCCA ACTCTCGTCTGGCGGGTCTTCCTAAATACAAACGTGAACTTTTGGCTGCGCAAGAAGCAGAACAAAACAATCAACACTAG
Upstream 100 bases:
>100_bases AACCCCGCACACATAATCCTTTAACCAACGGGATCAGCCTTAGTGAAGGTAAGGTCCCAGCTGTAACAAGCACGGCTGTA AAAAGCCAAGGAGCCCGAAG
Downstream 100 bases:
>100_bases AGGTAACATTATGTCTGAAATTCTTGTTGTCGGCAGTCTGGCTTACGATTCCATTGAAACTCCATCCGGTAAAGTGGACC GCGCTTTGGGTGGTTCCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: 23S rRNA m2A2503 methyltransferase
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MEANAGSTLAPVNYSDDNVAKPLENQPVNFYSLTLEDLKAYIKSKGKEQFRAQQIFKWVYEQRVTDPEQMTNLSKEFRQD LPSMLSFDLPPVLQHLKSVDGTQKFLFDMKDGMSVEAVVIPSEDRLTLCISSEVGCNMACKFCFTGKQKLKRRLRTEDIV GQFMQVHDRLAEGQRITNIVFMGMGEPLDNPEAVFKTIDVIHSPWGINLSRKKITVSTSGIVPEMWRVADAKVRLAVSLN GPNDEIRSQVMPINKRWDTKALLEACKEHYRVSKDKITFEYVLLKGITDQLEHARQLVKLVKDVPCKINIIPFNEHPGSG YERPDDDTIQAFHTELMNLGAHVLLRRSMGRDIFAACGQLTTVKERPQTMDISNSRLAGLPKYKRELLAAQEAEQNNQH
Sequences:
>Translated_399_residues MEANAGSTLAPVNYSDDNVAKPLENQPVNFYSLTLEDLKAYIKSKGKEQFRAQQIFKWVYEQRVTDPEQMTNLSKEFRQD LPSMLSFDLPPVLQHLKSVDGTQKFLFDMKDGMSVEAVVIPSEDRLTLCISSEVGCNMACKFCFTGKQKLKRRLRTEDIV GQFMQVHDRLAEGQRITNIVFMGMGEPLDNPEAVFKTIDVIHSPWGINLSRKKITVSTSGIVPEMWRVADAKVRLAVSLN GPNDEIRSQVMPINKRWDTKALLEACKEHYRVSKDKITFEYVLLKGITDQLEHARQLVKLVKDVPCKINIIPFNEHPGSG YERPDDDTIQAFHTELMNLGAHVLLRRSMGRDIFAACGQLTTVKERPQTMDISNSRLAGLPKYKRELLAAQEAEQNNQH >Mature_399_residues MEANAGSTLAPVNYSDDNVAKPLENQPVNFYSLTLEDLKAYIKSKGKEQFRAQQIFKWVYEQRVTDPEQMTNLSKEFRQD LPSMLSFDLPPVLQHLKSVDGTQKFLFDMKDGMSVEAVVIPSEDRLTLCISSEVGCNMACKFCFTGKQKLKRRLRTEDIV GQFMQVHDRLAEGQRITNIVFMGMGEPLDNPEAVFKTIDVIHSPWGINLSRKKITVSTSGIVPEMWRVADAKVRLAVSLN GPNDEIRSQVMPINKRWDTKALLEACKEHYRVSKDKITFEYVLLKGITDQLEHARQLVKLVKDVPCKINIIPFNEHPGSG YERPDDDTIQAFHTELMNLGAHVLLRRSMGRDIFAACGQLTTVKERPQTMDISNSRLAGLPKYKRELLAAQEAEQNNQH
Specific function: Specifically methylates position 2 of adenine 2503 in 23S rRNA
COG id: COG0820
COG function: function code R; Predicted Fe-S-cluster redox enzyme
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the radical SAM superfamily. RlmN family
Homologues:
Organism=Escherichia coli, GI1788865, Length=343, Percent_Identity=40.2332361516035, Blast_Score=270, Evalue=1e-73,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RLMN_BDEBA (Q6MPV7)
Other databases:
- EMBL: BX842647 - RefSeq: NP_967697.1 - ProteinModelPortal: Q6MPV7 - GeneID: 2734290 - GenomeReviews: BX842601_GR - KEGG: bba:Bd0733 - NMPDR: fig|264462.1.peg.667 - HOGENOM: HBG335345 - OMA: TFCSTAQ - PhylomeDB: Q6MPV7 - BioCyc: BBAC264462:BD0733-MONOMER - GO: GO:0005737 - HAMAP: MF_01849 - InterPro: IPR006638 - InterPro: IPR007197 - InterPro: IPR004383 - PIRSF: PIRSF006004 - SMART: SM00729 - TIGRFAMs: TIGR00048
Pfam domain/function: PF04055 Radical_SAM
EC number: =2.1.1.192
Molecular weight: Translated: 45370; Mature: 45370
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEANAGSTLAPVNYSDDNVAKPLENQPVNFYSLTLEDLKAYIKSKGKEQFRAQQIFKWVY CCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHH EQRVTDPEQMTNLSKEFRQDLPSMLSFDLPPVLQHLKSVDGTQKFLFDMKDGMSVEAVVI HHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEE PSEDRLTLCISSEVGCNMACKFCFTGKQKLKRRLRTEDIVGQFMQVHDRLAEGQRITNIV CCCCCEEEEECCCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE FMGMGEPLDNPEAVFKTIDVIHSPWGINLSRKKITVSTSGIVPEMWRVADAKVRLAVSLN EEECCCCCCCHHHHHHHHHHHCCCCCCCEECCEEEEECCCCCHHHHHHCCCEEEEEEEEC GPNDEIRSQVMPINKRWDTKALLEACKEHYRVSKDKITFEYVLLKGITDQLEHARQLVKL CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH VKDVPCKINIIPFNEHPGSGYERPDDDTIQAFHTELMNLGAHVLLRRSMGRDIFAACGQL HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCH TTVKERPQTMDISNSRLAGLPKYKRELLAAQEAEQNNQH HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MEANAGSTLAPVNYSDDNVAKPLENQPVNFYSLTLEDLKAYIKSKGKEQFRAQQIFKWVY CCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHH EQRVTDPEQMTNLSKEFRQDLPSMLSFDLPPVLQHLKSVDGTQKFLFDMKDGMSVEAVVI HHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEE PSEDRLTLCISSEVGCNMACKFCFTGKQKLKRRLRTEDIVGQFMQVHDRLAEGQRITNIV CCCCCEEEEECCCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE FMGMGEPLDNPEAVFKTIDVIHSPWGINLSRKKITVSTSGIVPEMWRVADAKVRLAVSLN EEECCCCCCCHHHHHHHHHHHCCCCCCCEECCEEEEECCCCCHHHHHHCCCEEEEEEEEC GPNDEIRSQVMPINKRWDTKALLEACKEHYRVSKDKITFEYVLLKGITDQLEHARQLVKL CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH VKDVPCKINIIPFNEHPGSGYERPDDDTIQAFHTELMNLGAHVLLRRSMGRDIFAACGQL HHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCH TTVKERPQTMDISNSRLAGLPKYKRELLAAQEAEQNNQH HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA