| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is cbh [H]
Identifier: 42522252
GI number: 42522252
Start: 615748
End: 616809
Strand: Direct
Name: cbh [H]
Synonym: Bd0665
Alternate gene names: 42522252
Gene position: 615748-616809 (Clockwise)
Preceding gene: 42522251
Following gene: 42522253
Centisome position: 16.28
GC content: 52.82
Gene sequence:
>1062_bases ATGAAGGTGTTATCCGTTTTTTTAAGTCTGCTCTTGGCAGTTCCCGCCTATCCGTGCACCCGCATTTTGTGGGACGGGAA AAACCAGGATGTTATTGTGGGTCGTAATATGGATTGGTCCGAGGACACTGGCTCGAACATGTGGTTGTTCCCGCGGGGGA TGGAGCGTGATGGGATGGCCTCCAAGAATTCTGCTAAGTGGACGTCCAAGTATGGCAGTGTGATTCTGTCGATGTACGAT GTGGGGACTGCGGATGGGGTGAATGAAAAGGGACTGACGGCAAATTTGTTGTATCTGTCGGAAAGCCATTTCGGGACGCG GGATGAAAAGGTGCCGGGGATGTCAGTCAGTATGTGGGCGCAGTATTTTCTGGATAACTTTGCCACAGTGTCTGAAGCGG TTTCTTCAATGGAAAAGTCTCCCATCCAGGTTTTGATGGCCAGCGTGCCCACGGCCCACGGAGTGCGGCAGGGGACCGTG CATCTGGCCTTGTCAGACAAAACCGGGGACTCGGTCGTGATGGAGTATATCGATGGCAAAGCCAAATTCTATCACGGCAA AGAGTATCGTTTTATGACGAACTCGCCTCCCTTCGACCAGCAGCTGAAATCCATGAAGCAGTATCAGGGATTTGGCGGCA GTAAAAAACTTCCAGGGACCACCGAGGCGGCCGACCGATTTGTGCGTGCGGCTTACTACACCCAGCACCTGCCGGACCCC AAGGACTATCGGGAGGCGGTGGCGGGCGTCCTGAGTGTGTTGCGAAATGTATCGCAGCCTTTTGGCACACCCGATCCGGC TCGCCCTTATATTTCGACCACCCGCTGGCGGACCGTGGCGGATCTGACCCGGGGACTTTATTTTTATGAAAGTACTTTGA GTCCCTATCTTGTCTGGGTTGAGCTGCCAAAGCTTGACTTCAAAAAGGGCACAGCGGTGAAGAAGATCAATCTGGTCAAA AACTATGAGCTGATTGGCGACGTCACGGGCAAGTTCAAAACCACACCGGTTTTCCAATTCCTGAAGCCTGACGATCAGGG ATTGTTGAAGGCGCAGAATTAA
Upstream 100 bases:
>100_bases GTCATGAATATCAGTTCAATCTGGATACGGCGGCCGGTCAGGAAGCCTTGCAACGATCTGTTGAATTTATGCAAAACCAA TTAAAAAAGGAGACGTCTTT
Downstream 100 bases:
>100_bases GTCCGTTTTGACTTTGCACGGCCCCACTTGCTAGGCTCTAGGCAGCCTGTGGGGCTGAGGTTTCAATGAATCTATTGTTT CGACTTTTGCATGTCCTGCT
Product: choloylglycine hydrolase
Products: NA
Alternate protein names: Bile salt hydrolase; Conjugated bile acid hydrolase; CBAH [H]
Number of amino acids: Translated: 353; Mature: 353
Protein sequence:
>353_residues MKVLSVFLSLLLAVPAYPCTRILWDGKNQDVIVGRNMDWSEDTGSNMWLFPRGMERDGMASKNSAKWTSKYGSVILSMYD VGTADGVNEKGLTANLLYLSESHFGTRDEKVPGMSVSMWAQYFLDNFATVSEAVSSMEKSPIQVLMASVPTAHGVRQGTV HLALSDKTGDSVVMEYIDGKAKFYHGKEYRFMTNSPPFDQQLKSMKQYQGFGGSKKLPGTTEAADRFVRAAYYTQHLPDP KDYREAVAGVLSVLRNVSQPFGTPDPARPYISTTRWRTVADLTRGLYFYESTLSPYLVWVELPKLDFKKGTAVKKINLVK NYELIGDVTGKFKTTPVFQFLKPDDQGLLKAQN
Sequences:
>Translated_353_residues MKVLSVFLSLLLAVPAYPCTRILWDGKNQDVIVGRNMDWSEDTGSNMWLFPRGMERDGMASKNSAKWTSKYGSVILSMYD VGTADGVNEKGLTANLLYLSESHFGTRDEKVPGMSVSMWAQYFLDNFATVSEAVSSMEKSPIQVLMASVPTAHGVRQGTV HLALSDKTGDSVVMEYIDGKAKFYHGKEYRFMTNSPPFDQQLKSMKQYQGFGGSKKLPGTTEAADRFVRAAYYTQHLPDP KDYREAVAGVLSVLRNVSQPFGTPDPARPYISTTRWRTVADLTRGLYFYESTLSPYLVWVELPKLDFKKGTAVKKINLVK NYELIGDVTGKFKTTPVFQFLKPDDQGLLKAQN >Mature_353_residues MKVLSVFLSLLLAVPAYPCTRILWDGKNQDVIVGRNMDWSEDTGSNMWLFPRGMERDGMASKNSAKWTSKYGSVILSMYD VGTADGVNEKGLTANLLYLSESHFGTRDEKVPGMSVSMWAQYFLDNFATVSEAVSSMEKSPIQVLMASVPTAHGVRQGTV HLALSDKTGDSVVMEYIDGKAKFYHGKEYRFMTNSPPFDQQLKSMKQYQGFGGSKKLPGTTEAADRFVRAAYYTQHLPDP KDYREAVAGVLSVLRNVSQPFGTPDPARPYISTTRWRTVADLTRGLYFYESTLSPYLVWVELPKLDFKKGTAVKKINLVK NYELIGDVTGKFKTTPVFQFLKPDDQGLLKAQN
Specific function: The enzyme catalyzes the degradation of conjugated bile acids in the mammalian gut [H]
COG id: COG3049
COG function: function code M; Penicillin V acylase and related amidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase C59 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003199 [H]
Pfam domain/function: PF02275 CBAH [H]
EC number: =3.5.1.24 [H]
Molecular weight: Translated: 39509; Mature: 39509
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVLSVFLSLLLAVPAYPCTRILWDGKNQDVIVGRNMDWSEDTGSNMWLFPRGMERDGMA CHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCC SKNSAKWTSKYGSVILSMYDVGTADGVNEKGLTANLLYLSESHFGTRDEKVPGMSVSMWA CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHH QYFLDNFATVSEAVSSMEKSPIQVLMASVPTAHGVRQGTVHLALSDKTGDSVVMEYIDGK HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCC AKFYHGKEYRFMTNSPPFDQQLKSMKQYQGFGGSKKLPGTTEAADRFVRAAYYTQHLPDP EEEEECCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCH KDYREAVAGVLSVLRNVSQPFGTPDPARPYISTTRWRTVADLTRGLYFYESTLSPYLVWV HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCEEEEE ELPKLDFKKGTAVKKINLVKNYELIGDVTGKFKTTPVFQFLKPDDQGLLKAQN ECCCCCCCCCCCEEEEHHHHCHHHEECCCCCEECCCHHEEECCCCCCCCCCCC >Mature Secondary Structure MKVLSVFLSLLLAVPAYPCTRILWDGKNQDVIVGRNMDWSEDTGSNMWLFPRGMERDGMA CHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCC SKNSAKWTSKYGSVILSMYDVGTADGVNEKGLTANLLYLSESHFGTRDEKVPGMSVSMWA CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHH QYFLDNFATVSEAVSSMEKSPIQVLMASVPTAHGVRQGTVHLALSDKTGDSVVMEYIDGK HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCC AKFYHGKEYRFMTNSPPFDQQLKSMKQYQGFGGSKKLPGTTEAADRFVRAAYYTQHLPDP EEEEECCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCH KDYREAVAGVLSVLRNVSQPFGTPDPARPYISTTRWRTVADLTRGLYFYESTLSPYLVWV HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCEEEEE ELPKLDFKKGTAVKKINLVKNYELIGDVTGKFKTTPVFQFLKPDDQGLLKAQN ECCCCCCCCCCCEEEEHHHHCHHHEECCCCCEECCCHHEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7618863; 11792842 [H]