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The map label for this gene is sufD [C]

Identifier: 42521820

GI number: 42521820

Start: 174229

End: 175488

Strand: Direct

Name: sufD [C]

Synonym: Bd0188

Alternate gene names: 42521820

Gene position: 174229-175488 (Clockwise)

Preceding gene: 42521819

Following gene: 42521821

Centisome position: 4.61

GC content: 50.4

Gene sequence:

>1260_bases
ATGAACCTGTTAACGAGCTATGAAAAATTCAGTCAATCCAACCCTGCAGATGGCGCATTGTCCGCTTTCCGCAAGGCCGG
GTATGACTATGCTCTAAATAAAGGTCTTCCGACCCGCAAGGATGAAGACTGGCACTATACCAGCGTGAAGACTTTGAACG
AAGGCACGTTCCTGCCAAGCGCAGTGAATCCGGTAGAGCCCAGCCACGAAACTCTGGTAGAGATCAAAAAAAATCTGAAT
CCGGAATTTGCCAACATCGTTTTCTTTAACGGTGTATTGAATAAGACCCTGTCGGCAGATTTGCCAGCGGGTGTGAGTCT
AAAAGAACTTTCCCAGTATCCGGCTCAGTTTGATGACACCTTTGATGCCTTGAACGGCGCCTATATGGCAAAACCGTTTT
TGGTGACTGTTGCCAAAGAAACGTCTGTGGAAAAACCTGTGAATTTCGTCTTCTTCACGTCTGCGGAAGGGGGCCCATCA
CTGATGGTAAATCCTCGCCTGAGTCTTGACGTGGGCGCGCGTTCTTCCGTGCGTGTGCTGGAAAGCCATTACGGCAAAGC
TGGCACCACTTACTTTGCAAACTCTGTCAGTGATGTGCATGTTGGCGAAAGTGCCAAGCTTGTGTACGTGCGTGTTCAGG
CTGAAAGCGAAAGTGCGGTGAATATCGGTCGCACGCGTCTGGTGGTTGAAAAAGACGCCAACGTGGAAAGCCTGGCTTTT
GCAACGGGTGCCAGACTGTCCCGTCATTCTTTGGATGTGATTTTGAACGGCCCTGGTTCCAATACGGAAATTCTGGGTGT
GTACGCGGTTCGTGGCAACCAGCACGTGGACAACACTTCCTTGATCAACCACAAGGTAGGCGAGTGCAATACCAATCAGC
TTTATAAAGGTATTCTGGACGGGGAATCCCGTGCCGTGTTCTGCGGAACTGTTCGCATCGAAAAGGGTGCGCAGAAAGCC
AACTCGGCCCAGTTGAATAATAATCTTCTTTTGAGCGGCAAAGCGGAAGCCGACAGCAAACCTTGTCTGCAGATTTATGC
TGACGATGTGAAAGCGGCGCACGGATCCACAGTGGGTCAGTTGAACCGTGAAGAGCTGTTCTATCTGCAGTCCCGCGCCA
TTCCGAAAGAGAAAGCCATCCCGATGCTGAGCTACGGGTATCTTTCTGAAGTGATTTACAAAATTTCCGACGAGAACATC
CAGAAATGGTTGTCTCGCCATCTGGACGAGGCGTTCAGCAGCCTTGCCCTGAATCGGTAA

Upstream 100 bases:

>100_bases
CGTTTTGGCCAACGGCAAAATCATCGAGACTGGCGACAGCTCTTTGGCGCTGAAGCTGGAAGAAAAAGGCTACGACTGGC
TGACGGTATAGGAAGTGACT

Downstream 100 bases:

>100_bases
GTGATATGAGTAATCTAGACGACATATTTGCCTCTGTAAGATCCCAGTTTCCGGCTTTGACTCAGAAAGTTCATGGCAAG
AACCTGGTTTATCTGGACAG

Product: transport protein involved in the [Fe-S] cluster assembly

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MNLLTSYEKFSQSNPADGALSAFRKAGYDYALNKGLPTRKDEDWHYTSVKTLNEGTFLPSAVNPVEPSHETLVEIKKNLN
PEFANIVFFNGVLNKTLSADLPAGVSLKELSQYPAQFDDTFDALNGAYMAKPFLVTVAKETSVEKPVNFVFFTSAEGGPS
LMVNPRLSLDVGARSSVRVLESHYGKAGTTYFANSVSDVHVGESAKLVYVRVQAESESAVNIGRTRLVVEKDANVESLAF
ATGARLSRHSLDVILNGPGSNTEILGVYAVRGNQHVDNTSLINHKVGECNTNQLYKGILDGESRAVFCGTVRIEKGAQKA
NSAQLNNNLLLSGKAEADSKPCLQIYADDVKAAHGSTVGQLNREELFYLQSRAIPKEKAIPMLSYGYLSEVIYKISDENI
QKWLSRHLDEAFSSLALNR

Sequences:

>Translated_419_residues
MNLLTSYEKFSQSNPADGALSAFRKAGYDYALNKGLPTRKDEDWHYTSVKTLNEGTFLPSAVNPVEPSHETLVEIKKNLN
PEFANIVFFNGVLNKTLSADLPAGVSLKELSQYPAQFDDTFDALNGAYMAKPFLVTVAKETSVEKPVNFVFFTSAEGGPS
LMVNPRLSLDVGARSSVRVLESHYGKAGTTYFANSVSDVHVGESAKLVYVRVQAESESAVNIGRTRLVVEKDANVESLAF
ATGARLSRHSLDVILNGPGSNTEILGVYAVRGNQHVDNTSLINHKVGECNTNQLYKGILDGESRAVFCGTVRIEKGAQKA
NSAQLNNNLLLSGKAEADSKPCLQIYADDVKAAHGSTVGQLNREELFYLQSRAIPKEKAIPMLSYGYLSEVIYKISDENI
QKWLSRHLDEAFSSLALNR
>Mature_419_residues
MNLLTSYEKFSQSNPADGALSAFRKAGYDYALNKGLPTRKDEDWHYTSVKTLNEGTFLPSAVNPVEPSHETLVEIKKNLN
PEFANIVFFNGVLNKTLSADLPAGVSLKELSQYPAQFDDTFDALNGAYMAKPFLVTVAKETSVEKPVNFVFFTSAEGGPS
LMVNPRLSLDVGARSSVRVLESHYGKAGTTYFANSVSDVHVGESAKLVYVRVQAESESAVNIGRTRLVVEKDANVESLAF
ATGARLSRHSLDVILNGPGSNTEILGVYAVRGNQHVDNTSLINHKVGECNTNQLYKGILDGESRAVFCGTVRIEKGAQKA
NSAQLNNNLLLSGKAEADSKPCLQIYADDVKAAHGSTVGQLNREELFYLQSRAIPKEKAIPMLSYGYLSEVIYKISDENI
QKWLSRHLDEAFSSLALNR

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=386, Percent_Identity=29.2746113989637, Blast_Score=164, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 45796; Mature: 45796

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLTSYEKFSQSNPADGALSAFRKAGYDYALNKGLPTRKDEDWHYTSVKTLNEGTFLPS
CCCCCCHHHHCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCCC
AVNPVEPSHETLVEIKKNLNPEFANIVFFNGVLNKTLSADLPAGVSLKELSQYPAQFDDT
CCCCCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCCHHHHHHCCCCCCCH
FDALNGAYMAKPFLVTVAKETSVEKPVNFVFFTSAEGGPSLMVNPRLSLDVGARSSVRVL
HHHHCCCEECCCEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCEEEECCCCCHHHHH
ESHYGKAGTTYFANSVSDVHVGESAKLVYVRVQAESESAVNIGRTRLVVEKDANVESLAF
HHHCCCCCCEEEECCCCEEECCCCCEEEEEEEECCCCCCEECCCEEEEEECCCCHHHHHH
ATGARLSRHSLDVILNGPGSNTEILGVYAVRGNQHVDNTSLINHKVGECNTNQLYKGILD
HHCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHCC
GESRAVFCGTVRIEKGAQKANSAQLNNNLLLSGKAEADSKPCLQIYADDVKAAHGSTVGQ
CCCCEEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEHHHHHCCCCCHHC
LNREELFYLQSRAIPKEKAIPMLSYGYLSEVIYKISDENIQKWLSRHLDEAFSSLALNR
CCHHHHHHHHHCCCCHHHCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLLTSYEKFSQSNPADGALSAFRKAGYDYALNKGLPTRKDEDWHYTSVKTLNEGTFLPS
CCCCCCHHHHCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCCC
AVNPVEPSHETLVEIKKNLNPEFANIVFFNGVLNKTLSADLPAGVSLKELSQYPAQFDDT
CCCCCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCCHHHHHHCCCCCCCH
FDALNGAYMAKPFLVTVAKETSVEKPVNFVFFTSAEGGPSLMVNPRLSLDVGARSSVRVL
HHHHCCCEECCCEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCEEEECCCCCHHHHH
ESHYGKAGTTYFANSVSDVHVGESAKLVYVRVQAESESAVNIGRTRLVVEKDANVESLAF
HHHCCCCCCEEEECCCCEEECCCCCEEEEEEEECCCCCCEECCCEEEEEECCCCHHHHHH
ATGARLSRHSLDVILNGPGSNTEILGVYAVRGNQHVDNTSLINHKVGECNTNQLYKGILD
HHCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHCC
GESRAVFCGTVRIEKGAQKANSAQLNNNLLLSGKAEADSKPCLQIYADDVKAAHGSTVGQ
CCCCEEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEHHHHHCCCCCHHC
LNREELFYLQSRAIPKEKAIPMLSYGYLSEVIYKISDENIQKWLSRHLDEAFSSLALNR
CCHHHHHHHHHCCCCHHHCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]