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The map label for this gene is nodJ [H]

Identifier: 42521776

GI number: 42521776

Start: 124615

End: 125403

Strand: Direct

Name: nodJ [H]

Synonym: Bd0139

Alternate gene names: 42521776

Gene position: 124615-125403 (Clockwise)

Preceding gene: 42521775

Following gene: 42521781

Centisome position: 3.29

GC content: 49.94

Gene sequence:

>789_bases
ATGAAGCTGAAAGACTGCTTTACCATTCCCACAGTGAACAGCGGCGCCATGAAAGTATGGTCCCGCAATTTCATGTATTT
TAAAAAAACCTGGCTGGTGTCCCTGTTCTGGATTGTTCTGGAGCCAGTGATCTATCTGGGGGCCATTGGTTTTGGTCTTG
GCGCCTTTGTGAACAACATGGGTGGCATGTCTTATATTGAATTCTTCTTCCCGGCGTTGTTGTCCACGACAGCGATGATG
GTGGCTTTCTTTGAGGGCACGTATGGGAACTACACGAAGCTGACTCATCAGAAAACCTATGCGACGATCATGCTGACTCG
TGTGGGGCCAGAGGAAATTGTGGCGGGCGAGCTTTTGTGGGCGACCAGCAAAGGTTTCTTCGGTGTGACGGGTGTCACGA
TCGTGGCGCTGTTCTTTGGGTTGATTGATTCTTACCGCATTTTGCTGGCGTTGCCGATTCTGTTCCTGATGAGTGCGCTG
TTTTCGTGCATTGGAATGATTCTGACTTCTTACGCACGCAACTATGACTCCTTTATCTATTCGACTTCAGGTTTGATTGT
TCCAATGAGTCTGCTCAGTGGAACGTACTTCCCGCTGGATCAGTTGCCCGCGGCACTTCGTTATGTGGCGTACTTGTTCC
CGCTGACTCACGCGGTGGCAGCCGTGCGCGAAGTGCTTCATCAGGGACCGACATTGTGGGTTTTGATTCACGTGTTAATT
CTGCTGGTGGCGACGTGGATCTGCATGAACATCGCCTTCTTCCGCATTCGTAAGAAACTGCTTAAATAA

Upstream 100 bases:

>100_bases
GCGTGGTGGACCTGATTGCCAGTGACAAGATCTTTATCCGCAAGCCGACGTTGAACGACGTCTTTTTGAAGCTTGCGGGT
CATCAACTGAGGGACGAATA

Downstream 100 bases:

>100_bases
TCAATCGACCGGGGTGACCTTGATGCCGTGTTTTTTCAAAAGCTCGGCAAAAACCCCGTCGCCGTCTTTCTGAGCGCCGG
TGAAGGTGCCGTCATAGATC

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MKLKDCFTIPTVNSGAMKVWSRNFMYFKKTWLVSLFWIVLEPVIYLGAIGFGLGAFVNNMGGMSYIEFFFPALLSTTAMM
VAFFEGTYGNYTKLTHQKTYATIMLTRVGPEEIVAGELLWATSKGFFGVTGVTIVALFFGLIDSYRILLALPILFLMSAL
FSCIGMILTSYARNYDSFIYSTSGLIVPMSLLSGTYFPLDQLPAALRYVAYLFPLTHAVAAVREVLHQGPTLWVLIHVLI
LLVATWICMNIAFFRIRKKLLK

Sequences:

>Translated_262_residues
MKLKDCFTIPTVNSGAMKVWSRNFMYFKKTWLVSLFWIVLEPVIYLGAIGFGLGAFVNNMGGMSYIEFFFPALLSTTAMM
VAFFEGTYGNYTKLTHQKTYATIMLTRVGPEEIVAGELLWATSKGFFGVTGVTIVALFFGLIDSYRILLALPILFLMSAL
FSCIGMILTSYARNYDSFIYSTSGLIVPMSLLSGTYFPLDQLPAALRYVAYLFPLTHAVAAVREVLHQGPTLWVLIHVLI
LLVATWICMNIAFFRIRKKLLK
>Mature_262_residues
MKLKDCFTIPTVNSGAMKVWSRNFMYFKKTWLVSLFWIVLEPVIYLGAIGFGLGAFVNNMGGMSYIEFFFPALLSTTAMM
VAFFEGTYGNYTKLTHQKTYATIMLTRVGPEEIVAGELLWATSKGFFGVTGVTIVALFFGLIDSYRILLALPILFLMSAL
FSCIGMILTSYARNYDSFIYSTSGLIVPMSLLSGTYFPLDQLPAALRYVAYLFPLTHAVAAVREVLHQGPTLWVLIHVLI
LLVATWICMNIAFFRIRKKLLK

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=206, Percent_Identity=21.8446601941748, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29443; Mature: 29443

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3019841; 3419422 [H]