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The map label for this gene is dedA [H]

Identifier: 42521725

GI number: 42521725

Start: 74102

End: 74776

Strand: Direct

Name: dedA [H]

Synonym: Bd0080

Alternate gene names: 42521725

Gene position: 74102-74776 (Clockwise)

Preceding gene: 42521724

Following gene: 42521728

Centisome position: 1.96

GC content: 48.89

Gene sequence:

>675_bases
TTGCGCTTGGGGGCCAATGCTAAGATTCTGGCCCCTATGATGGAACTCATTGATATTATATTGCACCTTGATAAGCACAT
CGCTGAATGGATCGTTTTCTTCGGACCATGGCTGTATGTGATTCTTTTCCTGATCATCTTTGCTGAAACCGGCCTGGTGG
TGACACCGTTCCTGCCGGGGGATTCCCTGCTGTTTGCACTGGGTGCTTTCACCGTGGTGGAAGGTGGTCTGAATCTTTGG
GTGATTCTGATCAGTCTGACCATCGCCGGGATTCTGGGCGACACCGTGAACTATCATATCGGGAAGTATTTAGGACCGAA
GGTCTTTGAGTCGGATTCCCGCTTCTTCAAGAAAAAATATCTGGAACAAACCCATGCCTTCTATGAGCGCTGGGGAGCTT
TTACAATTGTAGCTGCCCGCTTTGCTCCGATCGTTCGCACATTCGCTCCGTTTGTAGCTGGTATCGGTGAAATGCAATAC
CGCAAGTTCATCGTTTACAACATCGGTGGTGCGATTGCGTGGGTGTGGATCTTTGTTCTGGCAGGTCACTTCTTCGGAAA
TCTTCCGGTGGTGAAGCAGAACTTCCATATCGTTATCTTCGGTGTGATCGGTGTTTCTTTGTTGCCGATGGTGTGGCCGT
GGGTTTCAAGTAAGCTTAAGAAAAAGCAGGCTTAA

Upstream 100 bases:

>100_bases
GACAGTTGTGGACCGAGAAAACCTGTCCAAGATGATTGAAGACAGATTCAGTTACTTCGATCGCGCAGAGGCCCGCCGCA
TCGTCGGGATCTGATTTTTC

Downstream 100 bases:

>100_bases
TCAGCCAGTCAAGCGCGAGACCAGTTCCTTCAAGTGAGGGTTGGTCTCATAGAACACGGGGTCCACGGACTTATAGTGCT
CACCCAGTGACTTCACAACA

Product: DedA protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MRLGANAKILAPMMELIDIILHLDKHIAEWIVFFGPWLYVILFLIIFAETGLVVTPFLPGDSLLFALGAFTVVEGGLNLW
VILISLTIAGILGDTVNYHIGKYLGPKVFESDSRFFKKKYLEQTHAFYERWGAFTIVAARFAPIVRTFAPFVAGIGEMQY
RKFIVYNIGGAIAWVWIFVLAGHFFGNLPVVKQNFHIVIFGVIGVSLLPMVWPWVSSKLKKKQA

Sequences:

>Translated_224_residues
MRLGANAKILAPMMELIDIILHLDKHIAEWIVFFGPWLYVILFLIIFAETGLVVTPFLPGDSLLFALGAFTVVEGGLNLW
VILISLTIAGILGDTVNYHIGKYLGPKVFESDSRFFKKKYLEQTHAFYERWGAFTIVAARFAPIVRTFAPFVAGIGEMQY
RKFIVYNIGGAIAWVWIFVLAGHFFGNLPVVKQNFHIVIFGVIGVSLLPMVWPWVSSKLKKKQA
>Mature_224_residues
MRLGANAKILAPMMELIDIILHLDKHIAEWIVFFGPWLYVILFLIIFAETGLVVTPFLPGDSLLFALGAFTVVEGGLNLW
VILISLTIAGILGDTVNYHIGKYLGPKVFESDSRFFKKKYLEQTHAFYERWGAFTIVAARFAPIVRTFAPFVAGIGEMQY
RKFIVYNIGGAIAWVWIFVLAGHFFGNLPVVKQNFHIVIFGVIGVSLLPMVWPWVSSKLKKKQA

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=196, Percent_Identity=55.1020408163265, Blast_Score=221, Evalue=3e-59,
Organism=Escherichia coli, GI1789481, Length=154, Percent_Identity=31.8181818181818, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789384, Length=158, Percent_Identity=31.6455696202532, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25236; Mature: 25236

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGANAKILAPMMELIDIILHLDKHIAEWIVFFGPWLYVILFLIIFAETGLVVTPFLPG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
DSLLFALGAFTVVEGGLNLWVILISLTIAGILGDTVNYHIGKYLGPKVFESDSRFFKKKY
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHH
LEQTHAFYERWGAFTIVAARFAPIVRTFAPFVAGIGEMQYRKFIVYNIGGAIAWVWIFVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEECCHHHHHHHHHHH
AGHFFGNLPVVKQNFHIVIFGVIGVSLLPMVWPWVSSKLKKKQA
HHHHHCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRLGANAKILAPMMELIDIILHLDKHIAEWIVFFGPWLYVILFLIIFAETGLVVTPFLPG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
DSLLFALGAFTVVEGGLNLWVILISLTIAGILGDTVNYHIGKYLGPKVFESDSRFFKKKY
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHH
LEQTHAFYERWGAFTIVAARFAPIVRTFAPFVAGIGEMQYRKFIVYNIGGAIAWVWIFVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEECCHHHHHHHHHHH
AGHFFGNLPVVKQNFHIVIFGVIGVSLLPMVWPWVSSKLKKKQA
HHHHHCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]