Click here to switch to the map view.

The map label for this gene is lpqC

Identifier: 41409515

GI number: 41409515

Start: 3795014

End: 3795931

Strand: Reverse

Name: lpqC

Synonym: MAP3417c

Alternate gene names: NA

Gene position: 3795931-3795014 (Counterclockwise)

Preceding gene: 41409517

Following gene: 41409509

Centisome position: 78.59

GC content: 71.79

Gene sequence:

>918_bases
ATGGCGTACGCCCGATGGCTGTGGCTCGCTGTGCTGGCGGTATGCGTGGTCGGCTGCGGTGTGCGGCATGTGTCGGCGGC
CAGCGCGCGAGACATTTCCGGCACCTTTCGTTCCGGCGGCATGGACCGAACCTACATGTTGCACGTGCCGGCGGGCGACC
CCGTCGGCCTGGTGCTCAGCCTGCACGGCGGCGGCGGAACCGGCATCGCGCAGCGCGGGCTGACCGGCTTCGACGCCGTT
GCTGACGCGCACAACCTGTTGGTCGTCTACCCCGACGGCTACGAGAAGAGCTGGGCCGACGGGCGCGGCGCCTCACCGGC
GGATCGCCACCACGTCGACGACGTCGCCTTCCTGGTCGGGCTGGTGACCAAGCTGCAAAACGACTACCGCGTCGCGCCCG
GCCACGTCTTCGTCACCGGAATGTCCAACGGGGGCTTCATGTCCAACCGGCTCGCCTGCGACCGCGCCGACGTCTTCGCC
GCCGTCGCGCCGGTGGCCGGCACCCTCGGCGTGGGCGTGGCCTGCAACCCGTCCCGGCCGGTGTCGGTGTGGGCGGCGCA
CGGGACCGCCGATCCGCTGGTGCCGTTCAAGGGCGGGGCGGTGCGCGGCCGGGGCGGCCTCAGCCACGCCGTCTCGGCGG
AAGCCATGGTGGACAAGTGGCGCAAGGCCGACGGATGCCAGGGCGATCCGTCGATGGAGCTGCTGCCCGACGCCCGCGAC
GGCACGGTGGTGCACCGCTTCGACTCCACGTCGTGCGCGGCGTCCACCGAGGTGGTCTTCTACCGGATCGACAAGGGCGG
GCACACCTGGCCCGGCGGCAAGCAGTACCTGCCCGCCGCGGTCATCGGCCCCACCACGCACACGCTGGACGGGTCGGAGG
CCATCGCGGAGTTCTTCCTGGCCCACGCCCGCGATTAA

Upstream 100 bases:

>100_bases
ATCACCGATAATGCGGTGCGTGCCACACCAGGGTTTGCTCCGTCGTCGACCGCGCGTCACCTGCGGGCCCTGCTCGACGC
GGCGCCGGTGATCTGACGAG

Downstream 100 bases:

>100_bases
CGCTGGCAGGACGGGCACCAGTAGGTCACCCGGTCCCCGGAGTCGTCGAACTCGATGGGGGTGCCGCAGCGGCGGCACGG
TTGGCCGGCCCGCCCGTAGA

Product: LpqC

Products: NA

Alternate protein names: Phospholipase/Carboxylesterase; Polyhydroxybutyrate Depolymerase; Lipoprotein; Esterase; Lipoprotein LpqP; Esterase Lipoprotein; Secreted Hydrolase; Esterase Lipoprotein LpqC; Secreted Esterase; Hydrolase; Feruloyl Esterase; Esterase/Lipase/Thioesterase; Poly(3-Hydroxybutyrate) Depolymerase; Secreted Protein; Ricin And Poly(3-Hydroxybutyrate) Depolymerase Fusion; Feruloyl Esterase B; Poly(3-Hydroxyalkanoate) Depolymerase; Carbohydrate Esterase Family 1 Protein; Alpha/Beta Family Hydrolase; LOW QUALITY PROTEIN Esterase Lipoprotein LpqC; Exported Esterase/Hydrolase; Poly(3-Hydroxybutyrate) Depolymerase-Like

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MAYARWLWLAVLAVCVVGCGVRHVSAASARDISGTFRSGGMDRTYMLHVPAGDPVGLVLSLHGGGGTGIAQRGLTGFDAV
ADAHNLLVVYPDGYEKSWADGRGASPADRHHVDDVAFLVGLVTKLQNDYRVAPGHVFVTGMSNGGFMSNRLACDRADVFA
AVAPVAGTLGVGVACNPSRPVSVWAAHGTADPLVPFKGGAVRGRGGLSHAVSAEAMVDKWRKADGCQGDPSMELLPDARD
GTVVHRFDSTSCAASTEVVFYRIDKGGHTWPGGKQYLPAAVIGPTTHTLDGSEAIAEFFLAHARD

Sequences:

>Translated_305_residues
MAYARWLWLAVLAVCVVGCGVRHVSAASARDISGTFRSGGMDRTYMLHVPAGDPVGLVLSLHGGGGTGIAQRGLTGFDAV
ADAHNLLVVYPDGYEKSWADGRGASPADRHHVDDVAFLVGLVTKLQNDYRVAPGHVFVTGMSNGGFMSNRLACDRADVFA
AVAPVAGTLGVGVACNPSRPVSVWAAHGTADPLVPFKGGAVRGRGGLSHAVSAEAMVDKWRKADGCQGDPSMELLPDARD
GTVVHRFDSTSCAASTEVVFYRIDKGGHTWPGGKQYLPAAVIGPTTHTLDGSEAIAEFFLAHARD
>Mature_304_residues
AYARWLWLAVLAVCVVGCGVRHVSAASARDISGTFRSGGMDRTYMLHVPAGDPVGLVLSLHGGGGTGIAQRGLTGFDAVA
DAHNLLVVYPDGYEKSWADGRGASPADRHHVDDVAFLVGLVTKLQNDYRVAPGHVFVTGMSNGGFMSNRLACDRADVFAA
VAPVAGTLGVGVACNPSRPVSVWAAHGTADPLVPFKGGAVRGRGGLSHAVSAEAMVDKWRKADGCQGDPSMELLPDARDG
TVVHRFDSTSCAASTEVVFYRIDKGGHTWPGGKQYLPAAVIGPTTHTLDGSEAIAEFFLAHARD

Specific function: Unknown

COG id: COG3509

COG function: function code Q; Poly(3-hydroxybutyrate) depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31848; Mature: 31717

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYARWLWLAVLAVCVVGCGVRHVSAASARDISGTFRSGGMDRTYMLHVPAGDPVGLVLS
CCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHCCCCCCEEEEEECCCCCEEEEEE
LHGGGGTGIAQRGLTGFDAVADAHNLLVVYPDGYEKSWADGRGASPADRHHVDDVAFLVG
EECCCCCCHHHCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LVTKLQNDYRVAPGHVFVTGMSNGGFMSNRLACDRADVFAAVAPVAGTLGVGVACNPSRP
HHHHHCCCCEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCC
VSVWAAHGTADPLVPFKGGAVRGRGGLSHAVSAEAMVDKWRKADGCQGDPSMELLPDARD
EEEEEECCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCC
GTVVHRFDSTSCAASTEVVFYRIDKGGHTWPGGKQYLPAAVIGPTTHTLDGSEAIAEFFL
CCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHH
AHARD
HHCCC
>Mature Secondary Structure 
AYARWLWLAVLAVCVVGCGVRHVSAASARDISGTFRSGGMDRTYMLHVPAGDPVGLVLS
CHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHCCCCCCEEEEEECCCCCEEEEEE
LHGGGGTGIAQRGLTGFDAVADAHNLLVVYPDGYEKSWADGRGASPADRHHVDDVAFLVG
EECCCCCCHHHCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LVTKLQNDYRVAPGHVFVTGMSNGGFMSNRLACDRADVFAAVAPVAGTLGVGVACNPSRP
HHHHHCCCCEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCC
VSVWAAHGTADPLVPFKGGAVRGRGGLSHAVSAEAMVDKWRKADGCQGDPSMELLPDARD
EEEEEECCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCC
GTVVHRFDSTSCAASTEVVFYRIDKGGHTWPGGKQYLPAAVIGPTTHTLDGSEAIAEFFL
CCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHH
AHARD
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA