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The map label for this gene is ycdC [C]

Identifier: 41409512

GI number: 41409512

Start: 3788920

End: 3789579

Strand: Direct

Name: ycdC [C]

Synonym: MAP3414

Alternate gene names: 41409512

Gene position: 3788920-3789579 (Clockwise)

Preceding gene: 41409511

Following gene: 41409513

Centisome position: 78.45

GC content: 68.03

Gene sequence:

>660_bases
ATGGCGACGGCCCGAAGGCGATTATCCCCCGAAGATCGGCGGGCTGAGCTGCTCGCTTTAGGGGCGGAGGTCTTCGGCAA
GCGGCCCTACGACGAGGTCCGCATCGACGAGATCGCGGAGCGCGCCGGGGTGTCGCGGGCCCTGATGTACCACTACTTCC
CGGACAAGCGAGCGTTTTTCGCGGCGGTGGTCAAGGACGAGGCCGACCGGCTGTACGAGAACACCAACATGGACGACGTC
ACCGGGTTGACCATGTATGAGGAGATCCGGGTCGGGGTGTTGGCCTACATGGCCTACCACGAGCAGAACCCGGAGGCCGC
ATGGGCCGCCTACGTCGGCCTGGGCCGGTCCGACCCGGTTCTGCTGGGCGTCGAGGACGACGCCAAGAACCGGCAGATGG
AACACATCATGTCCCGGATCAACCAGCTGCTCGCCGAGGTGCCCGCGACGCGGGAGCCCGACGTCGAGCGGCACCTGCGG
GTCATCCTGCACGGCTGGCTGGCGTTCACCTTCGAGATCTGCCGGCAGCGCATCATCGACCCCACCACCGACGCCGACAA
GCTCGCCGACGCCTGCGCGCACGCGCTGCTGGACGCCATCGGCCGGGTGCCCGAGATCCCCGAGGAGCTGGGCGAGGCGA
TGGCCAACTCGCGGCTCTGA

Upstream 100 bases:

>100_bases
ACCGTCAATTATTCCGGTGCATTACCGCTGGCCCAGGGCGTCGAGTTCGGATGAATCCATTGTGGCCGGTGTCTCATGTC
GTATGAGTACTATCTGACAC

Downstream 100 bases:

>100_bases
GCGGGCCGCGACCATGTCGGTGCCCGTTGGCACCATGGACGGGTGAGCACTCCCGCCGAGCCCCGGCCGTCCAGGCCGTC
CGACCCGCTGGGCCGGTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: TetR-Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator TetR Family; Regulatory Protein TetR; Tetr Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; Transcriptional Regulator TetR-Family

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MATARRRLSPEDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFFAAVVKDEADRLYENTNMDDV
TGLTMYEEIRVGVLAYMAYHEQNPEAAWAAYVGLGRSDPVLLGVEDDAKNRQMEHIMSRINQLLAEVPATREPDVERHLR
VILHGWLAFTFEICRQRIIDPTTDADKLADACAHALLDAIGRVPEIPEELGEAMANSRL

Sequences:

>Translated_219_residues
MATARRRLSPEDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFFAAVVKDEADRLYENTNMDDV
TGLTMYEEIRVGVLAYMAYHEQNPEAAWAAYVGLGRSDPVLLGVEDDAKNRQMEHIMSRINQLLAEVPATREPDVERHLR
VILHGWLAFTFEICRQRIIDPTTDADKLADACAHALLDAIGRVPEIPEELGEAMANSRL
>Mature_218_residues
ATARRRLSPEDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFFAAVVKDEADRLYENTNMDDVT
GLTMYEEIRVGVLAYMAYHEQNPEAAWAAYVGLGRSDPVLLGVEDDAKNRQMEHIMSRINQLLAEVPATREPDVERHLRV
ILHGWLAFTFEICRQRIIDPTTDADKLADACAHALLDAIGRVPEIPEELGEAMANSRL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24812; Mature: 24681

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATARRRLSPEDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFF
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHH
AAVVKDEADRLYENTNMDDVTGLTMYEEIRVGVLAYMAYHEQNPEAAWAAYVGLGRSDPV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCE
LLGVEDDAKNRQMEHIMSRINQLLAEVPATREPDVERHLRVILHGWLAFTFEICRQRIID
EEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PTTDADKLADACAHALLDAIGRVPEIPEELGEAMANSRL
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
ATARRRLSPEDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFF
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHH
AAVVKDEADRLYENTNMDDVTGLTMYEEIRVGVLAYMAYHEQNPEAAWAAYVGLGRSDPV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCE
LLGVEDDAKNRQMEHIMSRINQLLAEVPATREPDVERHLRVILHGWLAFTFEICRQRIID
EEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PTTDADKLADACAHALLDAIGRVPEIPEELGEAMANSRL
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA