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The map label for this gene is ycdC [C]

Identifier: 41409406

GI number: 41409406

Start: 3679525

End: 3680211

Strand: Direct

Name: ycdC [C]

Synonym: MAP3308

Alternate gene names: 41409406

Gene position: 3679525-3680211 (Clockwise)

Preceding gene: 41409402

Following gene: 41409408

Centisome position: 76.18

GC content: 68.12

Gene sequence:

>687_bases
ATGAGCGAACTCGCCAAGATGCCGGCACGGCGTGCCGTCAAATCGGCTGACCGCGGTCGGCCGACGGACGGCGCCGCGGC
TTCCAACCGGCGAGGCAACCGGTTGCCCCGCGACGAGCGGCGCGGCCAGCTGCTCGTCGTCGCCAGTGACGTGTTCGTCG
ACCGCGGCTACCACGCGGCCGGCATGGACGAGATCGCCGACCGGGCCGGGGTCAGCAAACCCGTTCTGTACCAACACTTT
ACGAGCAAGCTCGAGCTGTACCTCGCGGTGCTGGCCCGGCATGTGGAGAACCTGGTCTCCGGCGTGCAGCAGGCCCTGAG
CACCACCAAGGACAACCGGCGGCGGTTGCACGCCGCGGTGCAAGCGTTTTTCGACTTCATCGAGCACGACAGCCAGGGCT
ACCGGCTGATCTTCGAGAACGACTACGTCACCGAACCCGAGGTGGCCGCCCAGTTGCGGGTGGCCACCGAATCCTGCATC
GACGCGGTCTACGCGTTGATCAGTGAGGACTCCGGGCTGGACCCACACCGGGCGCGGATGATCGCGGTCGGACTGGTCGG
CATCAGCGTCGACTGCGCCCGCTATTGGCTTGACTCCGACCGCCCGATCTCCAAGGCCGACGCCGTGGAGGGCACCGTCG
CGTTCGCCTGGGGCGGGCTGTCACACGTGCCGCTCACCCGCTCGTAG

Upstream 100 bases:

>100_bases
CCCGCGGGTAGTAAGGTCTGTGCAACGAGCTGCGAGCGGCTGGCCCCGGTTTACCGACGGCCGGCCCTCGGCGATCAGGT
GACGATCAGATGAGGACTCG

Downstream 100 bases:

>100_bases
GCGCCCCTCAACGCCCCTTGCCGGCGTGCTTGCCGACCACCTCGGCGCCCACCCCGAAGCCGACTCGGCGCACGTCGGCG
ATGCCGATCTCGACGTAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; Transcriptional Regulator; Regulatory Protein TetR; TetR-Type Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulatory Protein; TetR-Family Regulatory Protein; Tetr Family Transcriptional Regulator; Transcriptional Regulator TetR-Family; Transcriptional Regulator TetR Family Protein; TetR-Family Protein Regulatory Protein; Transcription Regulator; Transcriptional Regulator Tetr Family; TetR-Family Transcriptional Regulator Protein; Regulatory Protein

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSELAKMPARRAVKSADRGRPTDGAAASNRRGNRLPRDERRGQLLVVASDVFVDRGYHAAGMDEIADRAGVSKPVLYQHF
TSKLELYLAVLARHVENLVSGVQQALSTTKDNRRRLHAAVQAFFDFIEHDSQGYRLIFENDYVTEPEVAAQLRVATESCI
DAVYALISEDSGLDPHRARMIAVGLVGISVDCARYWLDSDRPISKADAVEGTVAFAWGGLSHVPLTRS

Sequences:

>Translated_228_residues
MSELAKMPARRAVKSADRGRPTDGAAASNRRGNRLPRDERRGQLLVVASDVFVDRGYHAAGMDEIADRAGVSKPVLYQHF
TSKLELYLAVLARHVENLVSGVQQALSTTKDNRRRLHAAVQAFFDFIEHDSQGYRLIFENDYVTEPEVAAQLRVATESCI
DAVYALISEDSGLDPHRARMIAVGLVGISVDCARYWLDSDRPISKADAVEGTVAFAWGGLSHVPLTRS
>Mature_227_residues
SELAKMPARRAVKSADRGRPTDGAAASNRRGNRLPRDERRGQLLVVASDVFVDRGYHAAGMDEIADRAGVSKPVLYQHFT
SKLELYLAVLARHVENLVSGVQQALSTTKDNRRRLHAAVQAFFDFIEHDSQGYRLIFENDYVTEPEVAAQLRVATESCID
AVYALISEDSGLDPHRARMIAVGLVGISVDCARYWLDSDRPISKADAVEGTVAFAWGGLSHVPLTRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25108; Mature: 24976

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELAKMPARRAVKSADRGRPTDGAAASNRRGNRLPRDERRGQLLVVASDVFVDRGYHAA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEHHHHHCCCCCCC
GMDEIADRAGVSKPVLYQHFTSKLELYLAVLARHVENLVSGVQQALSTTKDNRRRLHAAV
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
QAFFDFIEHDSQGYRLIFENDYVTEPEVAAQLRVATESCIDAVYALISEDSGLDPHRARM
HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
IAVGLVGISVDCARYWLDSDRPISKADAVEGTVAFAWGGLSHVPLTRS
HHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
SELAKMPARRAVKSADRGRPTDGAAASNRRGNRLPRDERRGQLLVVASDVFVDRGYHAA
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEHHHHHCCCCCCC
GMDEIADRAGVSKPVLYQHFTSKLELYLAVLARHVENLVSGVQQALSTTKDNRRRLHAAV
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
QAFFDFIEHDSQGYRLIFENDYVTEPEVAAQLRVATESCIDAVYALISEDSGLDPHRARM
HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
IAVGLVGISVDCARYWLDSDRPISKADAVEGTVAFAWGGLSHVPLTRS
HHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA