| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is mce1_1
Identifier: 41409387
GI number: 41409387
Start: 3652291
End: 3653616
Strand: Reverse
Name: mce1_1
Synonym: MAP3289c
Alternate gene names: NA
Gene position: 3653616-3652291 (Counterclockwise)
Preceding gene: 41409388
Following gene: 41409383
Centisome position: 75.65
GC content: 65.84
Gene sequence:
>1326_bases GTGAGGTCGAGAGACGCGAATAGTGATTCACTTATGCAGATCAATTCCCAGCGCATCCCGCCGTACAAGTTGCTCGCCGT CGCCGTGCTGCTGGTGCTGTCGCTGATTCTGGCGCTGATCTACGGCCAGTTCCGCGGCGCCTTCACGCCCAAGACCAGCC TGACGATGCTGGCGTCGCGGGCCGGGCTGGTGATGGATCCCGGGTCGAAGGTGACCTACAACGGCGTCGAGATCGGCCGG GTGGGCACGATCTCGGAGACGGTGCGCGACGGAAAGCCGGCGGCGAAATTCACCCTCGAGGTGTATCCGCGGTATCTCAA GCTGATCCCGTCGAACGTGAACGCCGACATCAAGGCGACGACGGTGTTCGGCGGCAAGTACGTGTCGCTGACGACGCCGG CGCACCCGTCGCCGCAGAAGATCACCCCGCACACCATCATCGACGCCCGCTCGGTGACGACCGAGATCAATACGTTGTTT CAGACGATCACCTCGATCGCGGAGAAGGTGGATCCGGTCAAGCTGAATCTGACGTTGAGCGCGGCCGCGCAGTCGTTGTC GGGTCTGGGCGAGAAGTTCGGCCAGTCGGTGGTCAACGCGAATGCTTTGCTCGATGACGTGAACCCGCGGATGCCGCAGG CGCGCAAGGACATTCAGGGGTTGGCGGCGTTGGGCGACACCTATGCGGACGCCTCGCCGGACCTGTTCGATTTTCTGAAC AATGCGGTGATCACCTCGCGGACGATCAACGCCCAGCAGAAGGATCTGGACCAGGCGCTGTTGTCGGCGGCCGGGTTCGG CAACACCGGCGCCGACCTGTTCACCAAGGGCGGGCCGTATCTGGCGCGCGGCGCCCACGACCTGGTGCCCACCGCCCAAC TGCTGGACACCTACAGCCCCGAGATCTACTGCCTGATGCGCAACGAACACGACGCGCTGCCCGCCACCGGCGCGGCCGAG GGCGGTTTCAACGGCTACTCACTCAACATGAACACCGAGGCGCTCTCCGGGCTGGGCCTCATCGCGAACCCGGTGTCCGC GGTGCCCGTCATCGCCTCAATGGTGGGCGGGATCGTCGGCGTGGTCGGCGGCGCGCCCAACCCCTACATCTATCCCGAGA ACCTGCCCCGGGTGAGCGCCCGCGGCGGGCCGGGAGGCGCGCCGGGCTGCTGGCAGAAGATCACCCGGGACCTGTGGCCG GCGCCCGAGCTGATCATGGACACCGGCAACAGCATCGCGCCCTACAACCACCTGGACACCGGATCGCCCTACGCGCTCGA GTACGTCTGGGGCCGCCAGGTCGGCGACAACACCATCAACCCGTAG
Upstream 100 bases:
>100_bases TGTGCGGCCGTCGCGGTACATTTCAGAGGTCTGAACCAGAGGTGAGGTTGCCTACAACGCGGGAAATGGGCGCGCAAAGC GAGCACAAGGGGCGGCGGCG
Downstream 100 bases:
>100_bases GCCGTCAGGCCTGGTAGGCCGCCTTGGGCCGGTCGGTCGGCCGCACGTCCCGCCCGGCGCCGGCCGACATGGACGCGGCC TCACCGCGGGCCAGGCCCAC
Product: Mce1_1
Products: NA
Alternate protein names: Mce Family Protein; Secreted Protein; MCE-Family A; Virulence Factor; MCE-Family Protein; Mce Family A; MCE Family Protein; Mce-Related Protein; Cell Invasion Protein; MCE-Family; Virulence Factor MCE-Like Protein
Number of amino acids: Translated: 441; Mature: 441
Protein sequence:
>441_residues MRSRDANSDSLMQINSQRIPPYKLLAVAVLLVLSLILALIYGQFRGAFTPKTSLTMLASRAGLVMDPGSKVTYNGVEIGR VGTISETVRDGKPAAKFTLEVYPRYLKLIPSNVNADIKATTVFGGKYVSLTTPAHPSPQKITPHTIIDARSVTTEINTLF QTITSIAEKVDPVKLNLTLSAAAQSLSGLGEKFGQSVVNANALLDDVNPRMPQARKDIQGLAALGDTYADASPDLFDFLN NAVITSRTINAQQKDLDQALLSAAGFGNTGADLFTKGGPYLARGAHDLVPTAQLLDTYSPEIYCLMRNEHDALPATGAAE GGFNGYSLNMNTEALSGLGLIANPVSAVPVIASMVGGIVGVVGGAPNPYIYPENLPRVSARGGPGGAPGCWQKITRDLWP APELIMDTGNSIAPYNHLDTGSPYALEYVWGRQVGDNTINP
Sequences:
>Translated_441_residues MRSRDANSDSLMQINSQRIPPYKLLAVAVLLVLSLILALIYGQFRGAFTPKTSLTMLASRAGLVMDPGSKVTYNGVEIGR VGTISETVRDGKPAAKFTLEVYPRYLKLIPSNVNADIKATTVFGGKYVSLTTPAHPSPQKITPHTIIDARSVTTEINTLF QTITSIAEKVDPVKLNLTLSAAAQSLSGLGEKFGQSVVNANALLDDVNPRMPQARKDIQGLAALGDTYADASPDLFDFLN NAVITSRTINAQQKDLDQALLSAAGFGNTGADLFTKGGPYLARGAHDLVPTAQLLDTYSPEIYCLMRNEHDALPATGAAE GGFNGYSLNMNTEALSGLGLIANPVSAVPVIASMVGGIVGVVGGAPNPYIYPENLPRVSARGGPGGAPGCWQKITRDLWP APELIMDTGNSIAPYNHLDTGSPYALEYVWGRQVGDNTINP >Mature_441_residues MRSRDANSDSLMQINSQRIPPYKLLAVAVLLVLSLILALIYGQFRGAFTPKTSLTMLASRAGLVMDPGSKVTYNGVEIGR VGTISETVRDGKPAAKFTLEVYPRYLKLIPSNVNADIKATTVFGGKYVSLTTPAHPSPQKITPHTIIDARSVTTEINTLF QTITSIAEKVDPVKLNLTLSAAAQSLSGLGEKFGQSVVNANALLDDVNPRMPQARKDIQGLAALGDTYADASPDLFDFLN NAVITSRTINAQQKDLDQALLSAAGFGNTGADLFTKGGPYLARGAHDLVPTAQLLDTYSPEIYCLMRNEHDALPATGAAE GGFNGYSLNMNTEALSGLGLIANPVSAVPVIASMVGGIVGVVGGAPNPYIYPENLPRVSARGGPGGAPGCWQKITRDLWP APELIMDTGNSIAPYNHLDTGSPYALEYVWGRQVGDNTINP
Specific function: Unknown
COG id: COG1463
COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46740; Mature: 46740
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSRDANSDSLMQINSQRIPPYKLLAVAVLLVLSLILALIYGQFRGAFTPKTSLTMLASR CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC AGLVMDPGSKVTYNGVEIGRVGTISETVRDGKPAAKFTLEVYPRYLKLIPSNVNADIKAT CCEEECCCCEEEECCEEECCCCCHHHHHHCCCCHHEEEHHHHHHHHHHCCCCCCCCEEEE TVFGGKYVSLTTPAHPSPQKITPHTIIDARSVTTEINTLFQTITSIAEKVDPVKLNLTLS EEECCEEEEEECCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHH AAAQSLSGLGEKFGQSVVNANALLDDVNPRMPQARKDIQGLAALGDTYADASPDLFDFLN HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHC NAVITSRTINAQQKDLDQALLSAAGFGNTGADLFTKGGPYLARGAHDLVPTAQLLDTYSP CCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCHHHCCHHHHHHCCCC EIYCLMRNEHDALPATGAAEGGFNGYSLNMNTEALSGLGLIANPVSAVPVIASMVGGIVG CEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHCCCCHHHCCHHHHHHHHHHHHHHHH VVGGAPNPYIYPENLPRVSARGGPGGAPGCWQKITRDLWPAPELIMDTGNSIAPYNHLDT HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCC GSPYALEYVWGRQVGDNTINP CCCEEEEEEECCCCCCCCCCC >Mature Secondary Structure MRSRDANSDSLMQINSQRIPPYKLLAVAVLLVLSLILALIYGQFRGAFTPKTSLTMLASR CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC AGLVMDPGSKVTYNGVEIGRVGTISETVRDGKPAAKFTLEVYPRYLKLIPSNVNADIKAT CCEEECCCCEEEECCEEECCCCCHHHHHHCCCCHHEEEHHHHHHHHHHCCCCCCCCEEEE TVFGGKYVSLTTPAHPSPQKITPHTIIDARSVTTEINTLFQTITSIAEKVDPVKLNLTLS EEECCEEEEEECCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHH AAAQSLSGLGEKFGQSVVNANALLDDVNPRMPQARKDIQGLAALGDTYADASPDLFDFLN HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHC NAVITSRTINAQQKDLDQALLSAAGFGNTGADLFTKGGPYLARGAHDLVPTAQLLDTYSP CCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCHHHCCHHHHHHCCCC EIYCLMRNEHDALPATGAAEGGFNGYSLNMNTEALSGLGLIANPVSAVPVIASMVGGIVG CEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHCCCCHHHCCHHHHHHHHHHHHHHHH VVGGAPNPYIYPENLPRVSARGGPGGAPGCWQKITRDLWPAPELIMDTGNSIAPYNHLDT HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCC GSPYALEYVWGRQVGDNTINP CCCEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA