| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409338
Identifier: 41409338
GI number: 41409338
Start: 3596089
End: 3596871
Strand: Direct
Name: 41409338
Synonym: MAP3240
Alternate gene names: NA
Gene position: 3596089-3596871 (Clockwise)
Preceding gene: 41409337
Following gene: 41409339
Centisome position: 74.46
GC content: 70.24
Gene sequence:
>783_bases GTGAGCGGCCGAAAAGCTATGCGTGTGGCGACCTTCAACATCCTGCACGGTCGCACCGTCTGCGACGGCGTCAACGTGGA GCGGCTGCGGGACTGCATACGCCGGCTCGATCCGGACGTGCTCAGCCTGCAGGAGGTGGACTGCGACCAACCCCGGTCCG AACACGCCGATCTGACCGGCGCGGCGGCCGAGGCCATGGGCGCGGTGGAACACCGCTTCGTGGCGGCGATTTCGGGCACG CCGGGGGCCACCTGGATGGCGGCCACCGGCGACGAGCAGCCCGGCACCGCCGCCTACGGGATCGCGCTGCTGTCCCGGTA TCCGGTGGCCAGCTGGCAGGTGCTGCGGTTACCCCGCATTCCGATGCGATTTCCGATGTACCTGCCCGGCCCCAACCGGG TGATGATCGTCGACGAGGAACCGCGCGCCGCCGTCATCGCGCAGCTGCGCACCCCGATCGGCGAACTCACGGTGGCCAAC ACCCACCTGTCCTTCGTTCCCGGCTGGAACCGGCGCCAGCTGCGCCGGCTGATTCGCGACCTGCGCGGCTTGCCCGGGCC GCGGCTGCTGACCGGGGACCTGAACATGACGCCGCAGACGGTGCGCCGCTGGTCGGGGATGCGGGCGCTGGGCAACGCCA AAACCTTTCCGGCGGACAACCCCAACCGCCAGCTCGACCACATCCTGACCGATGATCGCCGGCTGCGCTGCGCCGCCGTG CAGGCCGACCTGATGCCGATCTCGGATCACCGCCCGTTGGTGGTGGACCTGCAGCGGGTGTGA
Upstream 100 bases:
>100_bases TGCCGGGGTTCGTGCTGGCGCGGTTGCTGGCGGTGGGCGAGGTGGTTTTTCGGTAACCCGCTGGGGCGCACGGCGCGGGG GGTGACCGTACGAGGGGAAA
Downstream 100 bases:
>100_bases CGGCTCATCGCCGCCAGCACCCGCTCGACGTCGCCCGGGGCGGGTAGCTCGTCGGCGATGCGGACGATCTGCGCGCCGAT CTCGGCCGCGTCGATCCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MSGRKAMRVATFNILHGRTVCDGVNVERLRDCIRRLDPDVLSLQEVDCDQPRSEHADLTGAAAEAMGAVEHRFVAAISGT PGATWMAATGDEQPGTAAYGIALLSRYPVASWQVLRLPRIPMRFPMYLPGPNRVMIVDEEPRAAVIAQLRTPIGELTVAN THLSFVPGWNRRQLRRLIRDLRGLPGPRLLTGDLNMTPQTVRRWSGMRALGNAKTFPADNPNRQLDHILTDDRRLRCAAV QADLMPISDHRPLVVDLQRV
Sequences:
>Translated_260_residues MSGRKAMRVATFNILHGRTVCDGVNVERLRDCIRRLDPDVLSLQEVDCDQPRSEHADLTGAAAEAMGAVEHRFVAAISGT PGATWMAATGDEQPGTAAYGIALLSRYPVASWQVLRLPRIPMRFPMYLPGPNRVMIVDEEPRAAVIAQLRTPIGELTVAN THLSFVPGWNRRQLRRLIRDLRGLPGPRLLTGDLNMTPQTVRRWSGMRALGNAKTFPADNPNRQLDHILTDDRRLRCAAV QADLMPISDHRPLVVDLQRV >Mature_259_residues SGRKAMRVATFNILHGRTVCDGVNVERLRDCIRRLDPDVLSLQEVDCDQPRSEHADLTGAAAEAMGAVEHRFVAAISGTP GATWMAATGDEQPGTAAYGIALLSRYPVASWQVLRLPRIPMRFPMYLPGPNRVMIVDEEPRAAVIAQLRTPIGELTVANT HLSFVPGWNRRQLRRLIRDLRGLPGPRLLTGDLNMTPQTVRRWSGMRALGNAKTFPADNPNRQLDHILTDDRRLRCAAVQ ADLMPISDHRPLVVDLQRV
Specific function: Unknown
COG id: COG3568
COG function: function code R; Metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28917; Mature: 28786
Theoretical pI: Translated: 10.16; Mature: 10.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGRKAMRVATFNILHGRTVCDGVNVERLRDCIRRLDPDVLSLQEVDCDQPRSEHADLTG CCCCCEEEEEEEEEECCCEEECCCCHHHHHHHHHHCCCCCEEHHHCCCCCCCCCCCCCHH AAAEAMGAVEHRFVAAISGTPGATWMAATGDEQPGTAAYGIALLSRYPVASWQVLRLPRI HHHHHHHHHHHEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCC PMRFPMYLPGPNRVMIVDEEPRAAVIAQLRTPIGELTVANTHLSFVPGWNRRQLRRLIRD CCCCCEEECCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCEEEECCCCCHHHHHHHHHH LRGLPGPRLLTGDLNMTPQTVRRWSGMRALGNAKTFPADNPNRQLDHILTDDRRLRCAAV HHCCCCCEEEECCCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEE QADLMPISDHRPLVVDLQRV EECCEECCCCCCEEEEEECC >Mature Secondary Structure SGRKAMRVATFNILHGRTVCDGVNVERLRDCIRRLDPDVLSLQEVDCDQPRSEHADLTG CCCCEEEEEEEEEECCCEEECCCCHHHHHHHHHHCCCCCEEHHHCCCCCCCCCCCCCHH AAAEAMGAVEHRFVAAISGTPGATWMAATGDEQPGTAAYGIALLSRYPVASWQVLRLPRI HHHHHHHHHHHEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCC PMRFPMYLPGPNRVMIVDEEPRAAVIAQLRTPIGELTVANTHLSFVPGWNRRQLRRLIRD CCCCCEEECCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCEEEECCCCCHHHHHHHHHH LRGLPGPRLLTGDLNMTPQTVRRWSGMRALGNAKTFPADNPNRQLDHILTDDRRLRCAAV HHCCCCCEEEECCCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEE QADLMPISDHRPLVVDLQRV EECCEECCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA