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The map label for this gene is yfdE [H]

Identifier: 41409291

GI number: 41409291

Start: 3544280

End: 3545494

Strand: Direct

Name: yfdE [H]

Synonym: MAP3193

Alternate gene names: 41409291

Gene position: 3544280-3545494 (Clockwise)

Preceding gene: 41409290

Following gene: 41409292

Centisome position: 73.38

GC content: 71.93

Gene sequence:

>1215_bases
ATGAGCGCTGCGGGTGCGGCCGGACCGCTGGACGGCATCCGGGTGCTCGAGCTGGGCACCCTGATCGCCGGCCCGTTCGC
CGGCCGGCTGCTGGGCGACATGGGCGCCGACGTGATCAAGGTGGAGCTCCCCCGGGCGCCCGACCCGCTGCGCACCTGGG
GCCAGGCCGAGGTCGACGGGCACCACGTGTTCTGGACGGTGCACGCCCGCAACAAACGAGCGATCACCCTCGACCTGCGC
CACCCGCGCGGCCGCGAGCTGTTCTGCGAGCTCGTCGAGAAGTCCGACATCGTGGTGGAGAACTTCCGTCCGGGCACGCT
GGAGAAGTGGAACCTGGGCTATGACGTGCTGTGCGAACGCAACCCCGGCATCATCCTGGTCCGGGTGTCCGGCTACGGGC
AGACCGGACCCGACGCCGCCAAGGCCGGGTACGCCTCGGTCGCCGAGGCGGCCAGCGGACTGCGCCACCTCAACGGCTTT
CCCGGCGGCCCGCCGCCCCGGCTGGCGCTGTCGCTCGGCGACAGCCTGGCCGGCATGTTCGGCGCCCAGGGCGCGCTGGC
CGCGCTGTACCGCCGCAGCGTCACCGGCCGCGGCCAGGTGGTCGACGTCGCACTGACCGAATCCTGTTTGGCCGTACAGG
AATCCACGATCCCGGATTACGACGTCGGCGGGGTGGTGCGCGGTCCGTCGGGCACCCGGCTCGAGGGCATCGCCCCGTCC
AACATCTACCGCAGCGCCGACGGCTCGTGGGTGGTGATCGCCGCCAACCAGGACACCGTGTTCGCCCGGCTGTGCAAGGC
GATGGGCCGCGCCGAGCTGGCCACCGACGAACGGTTCGCCACCCACGTCGCGCGCGGCCGCAACCAGGACGAACTCGACG
GGATCATCGGCGAGTGGGCCGCACAGCGCCAGCCGGACGAGATCATCGAAACCCTTTCCGCCGCAGGCGTGATCGCCGGG
CCGATCAACACGGTCGCCGAGGTCGTCAACGACCCGCAGCTGCGGGCCCGCGACATGCTGGTCGAGCATTACGACGAGCG
GCTGCGGCGCAACGTGCTGGGCCCGGGCATCGTGCCGGTGCTCTCGGAATCGCCGGGCCGGCTGCGCAACGCGGGTCCGG
CGCGGCCGGGCCAGCACAACGACGAGGTGTACCGCGGGCTGCTGGGCAAGACCGCCGAGGAACTCGAGGAGCTGCGGGCA
CAGGAGGTGCTGTGA

Upstream 100 bases:

>100_bases
CCACACACTATTACGCGGGACCGGACCAGCGCGACGCGCTGCGCTCGGCGGTCGGCATCGTCACCGACTGGCTGGTCCGG
CACGACTTCGCGGAGAAGGC

Downstream 100 bases:

>100_bases
ACACACATGTGGCCATCCGCGAGGTGGCGCTGCGCGACGGCCTGCAGATCGAGGCGCCGATCCCGTTGTCCGCCAAGCTC
GAACTGCTGGCCGCGGTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MSAAGAAGPLDGIRVLELGTLIAGPFAGRLLGDMGADVIKVELPRAPDPLRTWGQAEVDGHHVFWTVHARNKRAITLDLR
HPRGRELFCELVEKSDIVVENFRPGTLEKWNLGYDVLCERNPGIILVRVSGYGQTGPDAAKAGYASVAEAASGLRHLNGF
PGGPPPRLALSLGDSLAGMFGAQGALAALYRRSVTGRGQVVDVALTESCLAVQESTIPDYDVGGVVRGPSGTRLEGIAPS
NIYRSADGSWVVIAANQDTVFARLCKAMGRAELATDERFATHVARGRNQDELDGIIGEWAAQRQPDEIIETLSAAGVIAG
PINTVAEVVNDPQLRARDMLVEHYDERLRRNVLGPGIVPVLSESPGRLRNAGPARPGQHNDEVYRGLLGKTAEELEELRA
QEVL

Sequences:

>Translated_404_residues
MSAAGAAGPLDGIRVLELGTLIAGPFAGRLLGDMGADVIKVELPRAPDPLRTWGQAEVDGHHVFWTVHARNKRAITLDLR
HPRGRELFCELVEKSDIVVENFRPGTLEKWNLGYDVLCERNPGIILVRVSGYGQTGPDAAKAGYASVAEAASGLRHLNGF
PGGPPPRLALSLGDSLAGMFGAQGALAALYRRSVTGRGQVVDVALTESCLAVQESTIPDYDVGGVVRGPSGTRLEGIAPS
NIYRSADGSWVVIAANQDTVFARLCKAMGRAELATDERFATHVARGRNQDELDGIIGEWAAQRQPDEIIETLSAAGVIAG
PINTVAEVVNDPQLRARDMLVEHYDERLRRNVLGPGIVPVLSESPGRLRNAGPARPGQHNDEVYRGLLGKTAEELEELRA
QEVL
>Mature_403_residues
SAAGAAGPLDGIRVLELGTLIAGPFAGRLLGDMGADVIKVELPRAPDPLRTWGQAEVDGHHVFWTVHARNKRAITLDLRH
PRGRELFCELVEKSDIVVENFRPGTLEKWNLGYDVLCERNPGIILVRVSGYGQTGPDAAKAGYASVAEAASGLRHLNGFP
GGPPPRLALSLGDSLAGMFGAQGALAALYRRSVTGRGQVVDVALTESCLAVQESTIPDYDVGGVVRGPSGTRLEGIAPSN
IYRSADGSWVVIAANQDTVFARLCKAMGRAELATDERFATHVARGRNQDELDGIIGEWAAQRQPDEIIETLSAAGVIAGP
INTVAEVVNDPQLRARDMLVEHYDERLRRNVLGPGIVPVLSESPGRLRNAGPARPGQHNDEVYRGLLGKTAEELEELRAQ
EVL

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=381, Percent_Identity=32.8083989501312, Blast_Score=212, Evalue=4e-55,
Organism=Homo sapiens, GI300863124, Length=325, Percent_Identity=35.0769230769231, Blast_Score=209, Evalue=3e-54,
Organism=Homo sapiens, GI300863126, Length=381, Percent_Identity=30.1837270341207, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI13376042, Length=325, Percent_Identity=30.7692307692308, Blast_Score=166, Evalue=3e-41,
Organism=Homo sapiens, GI266456254, Length=399, Percent_Identity=28.0701754385965, Blast_Score=132, Evalue=8e-31,
Organism=Homo sapiens, GI42794625, Length=399, Percent_Identity=28.0701754385965, Blast_Score=132, Evalue=8e-31,
Organism=Homo sapiens, GI266458393, Length=264, Percent_Identity=33.7121212121212, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI266458397, Length=261, Percent_Identity=33.7164750957854, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=36.734693877551, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=36.734693877551, Blast_Score=88, Evalue=1e-17,
Organism=Escherichia coli, GI87082093, Length=343, Percent_Identity=33.8192419825073, Blast_Score=211, Evalue=6e-56,
Organism=Escherichia coli, GI1788717, Length=357, Percent_Identity=29.1316526610644, Blast_Score=138, Evalue=7e-34,
Organism=Escherichia coli, GI1786222, Length=402, Percent_Identity=26.3681592039801, Blast_Score=121, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI115535051, Length=330, Percent_Identity=27.2727272727273, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=267, Percent_Identity=28.0898876404494, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24648431, Length=401, Percent_Identity=34.6633416458853, Blast_Score=226, Evalue=2e-59,
Organism=Drosophila melanogaster, GI24585488, Length=386, Percent_Identity=30.3108808290155, Blast_Score=125, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43241; Mature: 43109

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAGAAGPLDGIRVLELGTLIAGPFAGRLLGDMGADVIKVELPRAPDPLRTWGQAEVDG
CCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCC
HHVFWTVHARNKRAITLDLRHPRGRELFCELVEKSDIVVENFRPGTLEKWNLGYDVLCER
EEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEC
NPGIILVRVSGYGQTGPDAAKAGYASVAEAASGLRHLNGFPGGPPPRLALSLGDSLAGMF
CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHH
GAQGALAALYRRSVTGRGQVVDVALTESCLAVQESTIPDYDVGGVVRGPSGTRLEGIAPS
CCCHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCEEECCCCCEECCCCCH
NIYRSADGSWVVIAANQDTVFARLCKAMGRAELATDERFATHVARGRNQDELDGIIGEWA
HHEECCCCCEEEEECCCCHHHHHHHHHHCCHHHCCHHHHHHHHHCCCCHHHHHHHHHHHH
AQRQPDEIIETLSAAGVIAGPINTVAEVVNDPQLRARDMLVEHYDERLRRNVLGPGIVPV
HCCCHHHHHHHHHHCCEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LSESPGRLRNAGPARPGQHNDEVYRGLLGKTAEELEELRAQEVL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SAAGAAGPLDGIRVLELGTLIAGPFAGRLLGDMGADVIKVELPRAPDPLRTWGQAEVDG
CCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCC
HHVFWTVHARNKRAITLDLRHPRGRELFCELVEKSDIVVENFRPGTLEKWNLGYDVLCER
EEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEC
NPGIILVRVSGYGQTGPDAAKAGYASVAEAASGLRHLNGFPGGPPPRLALSLGDSLAGMF
CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHH
GAQGALAALYRRSVTGRGQVVDVALTESCLAVQESTIPDYDVGGVVRGPSGTRLEGIAPS
CCCHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCEEECCCCCEECCCCCH
NIYRSADGSWVVIAANQDTVFARLCKAMGRAELATDERFATHVARGRNQDELDGIIGEWA
HHEECCCCCEEEEECCCCHHHHHHHHHHCCHHHCCHHHHHHHHHCCCCHHHHHHHHHHHH
AQRQPDEIIETLSAAGVIAGPINTVAEVVNDPQLRARDMLVEHYDERLRRNVLGPGIVPV
HCCCHHHHHHHHHHCCEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LSESPGRLRNAGPARPGQHNDEVYRGLLGKTAEELEELRAQEVL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]