Click here to switch to the map view.

The map label for this gene is ykuT [H]

Identifier: 41409272

GI number: 41409272

Start: 3524705

End: 3525700

Strand: Reverse

Name: ykuT [H]

Synonym: MAP3174c

Alternate gene names: 41409272

Gene position: 3525700-3524705 (Counterclockwise)

Preceding gene: 41409273

Following gene: 41409271

Centisome position: 73.0

GC content: 67.77

Gene sequence:

>996_bases
ATGACGAATAACACAAGCGTTCTCGCCGGAGCCATGACGACAGCGGCGCACCGCTGGCATGACTTCTGGCGGGGGGAACT
CGGTGAGTGGATCATCACCAGGGGTCTGCGGATCGTCATGGTGCTGATCGCGGCCGTGCTGGCGGCCCGGTTCGTCAACT
GGGTGGCCCTGCAGGTGAGCCGCCAGCCCACCACCGGCTTCGTCGAGAGCGACGCGCTGGTGCGCTCGGAAGCCTCCAAG
CACCGTCAGGCCGTGGCGTCGGTGATCTCCTGGGTGTCGGTCGTGATCATCGGCATCTGGGTGATGCTGCAGATCGCCAG
CATCCTGCAGTTCTCGGTGGGCGGGCTGGTCGCGCCGGCAACCGTGGTCGGTGCCGCGCTGGGTTTCGGCGCCCAGCAGT
TGGTGAAGGATCTGCTGTCCGGCTTCTTCATCCTCGCCGAGCGGCAGTACGGCTTCGGGGACCTGGTCACCCTGACCGTC
GTCGCCGCCACCGAGGCCAGCGGCACCGTCGAGAACGTGACATTGCGGGTCACCCGGCTGCGATCCCCGGACGGCGAGGT
GCTGACCATCCCCAACGGGCAGATCGTCAAGGTGGTCAACCTGTCCAAGGACTGGGCGCGCGCGGTGGTGGACATCCCGG
TGTCGACCAGCGCCGACCTGAACCGGGTGAACGAGGTGCTGCACCAGGAATGCGACCGCGCGATGGACAACCCGGTGCTG
GGCCAGCTGCTGTTGGACTCGCCGACGGTGATGGGTGTGGAAAGCATCGAGGTCGACACCGTCACCCTGCGGTTGGTGGC
GCGCACGTTGCCCGGTAAGCAGTTCGAGGTGGGCCGGCAGCTGCGCGTGCTGGTGATTCGGGCGCTGGCCCGTGCCGGCA
TCGTCACCGCGGCCGACGCGCGGGTGGGGCTGGTGGAAGACGCCAGCGTGCCGGCCGCCCAGGCCGCCGAACAGCAATCC
GACGATGACGTCCAAGGTGCGGTGCAGAAGCGTTGA

Upstream 100 bases:

>100_bases
GATCTGCGAACCGAGTACGAGGTTGGCAATCCCGCGGCCGTCCTGGACGGAGACATCGACGGCTTCCTGGAAGCGGGAAT
CCGTTGGCGCAACAGAAAAG

Downstream 100 bases:

>100_bases
AGTTCACCCTGAACATCCTGGAAAAGCGCGGCAGCGACGATGACACGGAGGCCGAACACCGCTGGCCGCAGTACGTCTTC
GGCGGGCGGATGCGCACCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MTNNTSVLAGAMTTAAHRWHDFWRGELGEWIITRGLRIVMVLIAAVLAARFVNWVALQVSRQPTTGFVESDALVRSEASK
HRQAVASVISWVSVVIIGIWVMLQIASILQFSVGGLVAPATVVGAALGFGAQQLVKDLLSGFFILAERQYGFGDLVTLTV
VAATEASGTVENVTLRVTRLRSPDGEVLTIPNGQIVKVVNLSKDWARAVVDIPVSTSADLNRVNEVLHQECDRAMDNPVL
GQLLLDSPTVMGVESIEVDTVTLRLVARTLPGKQFEVGRQLRVLVIRALARAGIVTAADARVGLVEDASVPAAQAAEQQS
DDDVQGAVQKR

Sequences:

>Translated_331_residues
MTNNTSVLAGAMTTAAHRWHDFWRGELGEWIITRGLRIVMVLIAAVLAARFVNWVALQVSRQPTTGFVESDALVRSEASK
HRQAVASVISWVSVVIIGIWVMLQIASILQFSVGGLVAPATVVGAALGFGAQQLVKDLLSGFFILAERQYGFGDLVTLTV
VAATEASGTVENVTLRVTRLRSPDGEVLTIPNGQIVKVVNLSKDWARAVVDIPVSTSADLNRVNEVLHQECDRAMDNPVL
GQLLLDSPTVMGVESIEVDTVTLRLVARTLPGKQFEVGRQLRVLVIRALARAGIVTAADARVGLVEDASVPAAQAAEQQS
DDDVQGAVQKR
>Mature_330_residues
TNNTSVLAGAMTTAAHRWHDFWRGELGEWIITRGLRIVMVLIAAVLAARFVNWVALQVSRQPTTGFVESDALVRSEASKH
RQAVASVISWVSVVIIGIWVMLQIASILQFSVGGLVAPATVVGAALGFGAQQLVKDLLSGFFILAERQYGFGDLVTLTVV
AATEASGTVENVTLRVTRLRSPDGEVLTIPNGQIVKVVNLSKDWARAVVDIPVSTSADLNRVNEVLHQECDRAMDNPVLG
QLLLDSPTVMGVESIEVDTVTLRLVARTLPGKQFEVGRQLRVLVIRALARAGIVTAADARVGLVEDASVPAAQAAEQQSD
DDVQGAVQKR

Specific function: May play a role in resistance to osmotic downshock [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=305, Percent_Identity=27.2131147540984, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 35515; Mature: 35384

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNNTSVLAGAMTTAAHRWHDFWRGELGEWIITRGLRIVMVLIAAVLAARFVNWVALQVS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
RQPTTGFVESDALVRSEASKHRQAVASVISWVSVVIIGIWVMLQIASILQFSVGGLVAPA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
TVVGAALGFGAQQLVKDLLSGFFILAERQYGFGDLVTLTVVAATEASGTVENVTLRVTRL
HHHHHHHCCCHHHHHHHHHHHHEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEE
RSPDGEVLTIPNGQIVKVVNLSKDWARAVVDIPVSTSADLNRVNEVLHQECDRAMDNPVL
CCCCCCEEECCCCCEEEEEECCHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHH
GQLLLDSPTVMGVESIEVDTVTLRLVARTLPGKQFEVGRQLRVLVIRALARAGIVTAADA
HHHHHCCCCEECCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEECCC
RVGLVEDASVPAAQAAEQQSDDDVQGAVQKR
CEEEECCCCCCHHHHHHCCCCCHHHHHHCCC
>Mature Secondary Structure 
TNNTSVLAGAMTTAAHRWHDFWRGELGEWIITRGLRIVMVLIAAVLAARFVNWVALQVS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
RQPTTGFVESDALVRSEASKHRQAVASVISWVSVVIIGIWVMLQIASILQFSVGGLVAPA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
TVVGAALGFGAQQLVKDLLSGFFILAERQYGFGDLVTLTVVAATEASGTVENVTLRVTRL
HHHHHHHCCCHHHHHHHHHHHHEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEE
RSPDGEVLTIPNGQIVKVVNLSKDWARAVVDIPVSTSADLNRVNEVLHQECDRAMDNPVL
CCCCCCEEECCCCCEEEEEECCHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHH
GQLLLDSPTVMGVESIEVDTVTLRLVARTLPGKQFEVGRQLRVLVIRALARAGIVTAADA
HHHHHCCCCEECCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEECCC
RVGLVEDASVPAAQAAEQQSDDDVQGAVQKR
CEEEECCCCCCHHHHHHCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]