| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409266
Identifier: 41409266
GI number: 41409266
Start: 3520308
End: 3521159
Strand: Reverse
Name: 41409266
Synonym: MAP3168c
Alternate gene names: NA
Gene position: 3521159-3520308 (Counterclockwise)
Preceding gene: 41409267
Following gene: 41409265
Centisome position: 72.91
GC content: 69.72
Gene sequence:
>852_bases GTGACCATGGCCGATCGTCTCGTCACCAAGGTCGACAAGTCCGCCGTGCTGGCCGGCCTTTTCGCCGTCTGGGACGACAT CGATGCGCTGTTGGCCGGCTTGTCCGAGACCCAATGGCGCGCGCCGAGTCCGCTGCCGGGCTGGGACGTCAAGGCCGTGG TGTCGCACATGATCGGCACCGAGTCCTTCCTCGCCGGCATCGCCGCACCCGAACCCGACGTCGACGTCTCGGCGCTGGAG CATGTGCGCAACGACATCGGCGCGATGAACGAGTGCTGGGTGCGTCATCTGAGCGCGCACGCCGACGCCGACGTGCTGGA AAGTTTCCGCGCGATCACCGATGATCGGCGCGCGGCCTTGACGAGCATGTCCGACGAGGAGTGGGACGCGGTGACGATGA CGCCCACCAGCCCGGACAGCCACGGCCGGTTCATGCGGATCCGGGTGTTCGACTGCTGGATGCACGAGCAGGACATCCGC GTGGCGTTGGGGCGGCCGCCCTCGGACGCGGATCTCGCCGGCCCGGCGGCGTCGCTGGCCGTCGACGAGATCGCCGCCAC CATGGGTTACGTCGTGGGCAAGCTGGCCAAGGCCCCGCAGGGCGCCCGCGTGGAGTTCGAGCTCACCGGTCCGCTGGCCC GCGTTATCCGGGTCAGCGTCGACGGCCGCGCCACGGTGGTCGACGATTTCGCCGGCGAGCAGGCGACCGCGACGATCCGG TGCGACGGGCTGCAGTTCACCCGGCTCGCCGGCGGGCGCCCGATGTGCCCCGCGCGCGACCAAACCGTCGAACTCGGCGG AGACAAAGGCCTGGCCAGCCATGTCGTGGCGCGCCTCAATTTCGTGATCTGA
Upstream 100 bases:
>100_bases GGGGTCGGTGGCGATGATCGCGTCGGCCTGACGGTTGGTGTCGGTCTAACGCGTCGGCCCGACGGCCGGTGTCGGCGGCG AGTCCCGCGGCCTACGATCG
Downstream 100 bases:
>100_bases TCGCCGCCCGGCGGGGAACATAATGCCGTTGCCGCTGGTTGATAGCCATGTACCATTGATAGTCCTGCCGAAAGTCGGCG GGGATGCGAGGGGCTGAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 283; Mature: 282
Protein sequence:
>283_residues MTMADRLVTKVDKSAVLAGLFAVWDDIDALLAGLSETQWRAPSPLPGWDVKAVVSHMIGTESFLAGIAAPEPDVDVSALE HVRNDIGAMNECWVRHLSAHADADVLESFRAITDDRRAALTSMSDEEWDAVTMTPTSPDSHGRFMRIRVFDCWMHEQDIR VALGRPPSDADLAGPAASLAVDEIAATMGYVVGKLAKAPQGARVEFELTGPLARVIRVSVDGRATVVDDFAGEQATATIR CDGLQFTRLAGGRPMCPARDQTVELGGDKGLASHVVARLNFVI
Sequences:
>Translated_283_residues MTMADRLVTKVDKSAVLAGLFAVWDDIDALLAGLSETQWRAPSPLPGWDVKAVVSHMIGTESFLAGIAAPEPDVDVSALE HVRNDIGAMNECWVRHLSAHADADVLESFRAITDDRRAALTSMSDEEWDAVTMTPTSPDSHGRFMRIRVFDCWMHEQDIR VALGRPPSDADLAGPAASLAVDEIAATMGYVVGKLAKAPQGARVEFELTGPLARVIRVSVDGRATVVDDFAGEQATATIR CDGLQFTRLAGGRPMCPARDQTVELGGDKGLASHVVARLNFVI >Mature_282_residues TMADRLVTKVDKSAVLAGLFAVWDDIDALLAGLSETQWRAPSPLPGWDVKAVVSHMIGTESFLAGIAAPEPDVDVSALEH VRNDIGAMNECWVRHLSAHADADVLESFRAITDDRRAALTSMSDEEWDAVTMTPTSPDSHGRFMRIRVFDCWMHEQDIRV ALGRPPSDADLAGPAASLAVDEIAATMGYVVGKLAKAPQGARVEFELTGPLARVIRVSVDGRATVVDDFAGEQATATIRC DGLQFTRLAGGRPMCPARDQTVELGGDKGLASHVVARLNFVI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30418; Mature: 30287
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMADRLVTKVDKSAVLAGLFAVWDDIDALLAGLSETQWRAPSPLPGWDVKAVVSHMIGT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCH ESFLAGIAAPEPDVDVSALEHVRNDIGAMNECWVRHLSAHADADVLESFRAITDDRRAAL HHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHH TSMSDEEWDAVTMTPTSPDSHGRFMRIRVFDCWMHEQDIRVALGRPPSDADLAGPAASLA HCCCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCHHHHH VDEIAATMGYVVGKLAKAPQGARVEFELTGPLARVIRVSVDGRATVVDDFAGEQATATIR HHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHEEEECCCCEEEEECCCCCCEEEEEE CDGLQFTRLAGGRPMCPARDQTVELGGDKGLASHVVARLNFVI ECCEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCC >Mature Secondary Structure TMADRLVTKVDKSAVLAGLFAVWDDIDALLAGLSETQWRAPSPLPGWDVKAVVSHMIGT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCH ESFLAGIAAPEPDVDVSALEHVRNDIGAMNECWVRHLSAHADADVLESFRAITDDRRAAL HHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHH TSMSDEEWDAVTMTPTSPDSHGRFMRIRVFDCWMHEQDIRVALGRPPSDADLAGPAASLA HCCCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCHHHHH VDEIAATMGYVVGKLAKAPQGARVEFELTGPLARVIRVSVDGRATVVDDFAGEQATATIR HHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHEEEECCCCEEEEECCCCCCEEEEEE CDGLQFTRLAGGRPMCPARDQTVELGGDKGLASHVVARLNFVI ECCEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA