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The map label for this gene is ycgM [C]

Identifier: 41409128

GI number: 41409128

Start: 3370552

End: 3371280

Strand: Reverse

Name: ycgM [C]

Synonym: MAP3030c

Alternate gene names: 41409128

Gene position: 3371280-3370552 (Counterclockwise)

Preceding gene: 41409130

Following gene: 41409127

Centisome position: 69.8

GC content: 66.39

Gene sequence:

>729_bases
ATGATCGCCCGCGAAATCGCCGAGCATCCATTCGGCACCCCCAACTTCACCGGCCGGTCGTGGCCGCTCGCCGACGTCCG
GCTGCTCGCCCCGATACTGGCCAGCAAGGTGGTGTGCGTCGGCAAGAACTACGCCGACCACATCGCCGAGATGGGCGAGG
CGACCGGCCCCGTGCCGGCCGACCCGGTGATCTTCCTCAAACCCAACACCGCCATCATCGGGCCGAACGTGCCGATTCGG
TTGCCGGCCAACGCATCACCCGTGCACTTCGAGGGCGAGCTGGCGGTGGTGATCGGCCGGCCCTGCAAGGACGTCTCGGC
CGCCCAGGCCGCCGAGAACATCCTCGGCTACACCATCGGCAACGACGTGTCGGCGCGCGACCAACAACGATCCGATGGTC
AGTGGACGCGGGCCAAGGGCCATGACACCTTCTGCCCGGTCGGGCCGTGGATCGTCACCGACCTCAATCCGCTGGACCCG
GGCGACCTGGAATTGCGCACCGAGGTCAACGGCGAGGTCAAGCAACGCAGCCGCACGTCGCTGCTGATCCACGACATCGG
CTCCATCGTCGAATGGATCTCGGCCGTGATGACCCTGCTGCCCGGTGATCTCATCCTCACCGGAACACCGGCGGGCGTGG
GTCCCATCGAGGACGGCGACACCGTCTCCATCACCATCGAGGGCATCGGTACCCTCACCAATCCCGTGGTCCGCAAAGGA
AAATCGTGA

Upstream 100 bases:

>100_bases
GGCCCTCACTAGGCTGAGCCAAATGCGCCTTGGTCGAATCGCCAGCCCCGACGGTGTCGCCTTCGTCAGTATCGAGGGCG
AACTCGACAACCCCGCCGAG

Downstream 100 bases:

>100_bases
CTGCACCCGCGAACGTCCGGGTCCGATTCTGCCCGTCGCCCACCGGCACCCCGCACGTCGGCATGGTCCGCACGGCGCTG
TTCAACTGGGCATACGCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MIAREIAEHPFGTPNFTGRSWPLADVRLLAPILASKVVCVGKNYADHIAEMGEATGPVPADPVIFLKPNTAIIGPNVPIR
LPANASPVHFEGELAVVIGRPCKDVSAAQAAENILGYTIGNDVSARDQQRSDGQWTRAKGHDTFCPVGPWIVTDLNPLDP
GDLELRTEVNGEVKQRSRTSLLIHDIGSIVEWISAVMTLLPGDLILTGTPAGVGPIEDGDTVSITIEGIGTLTNPVVRKG
KS

Sequences:

>Translated_242_residues
MIAREIAEHPFGTPNFTGRSWPLADVRLLAPILASKVVCVGKNYADHIAEMGEATGPVPADPVIFLKPNTAIIGPNVPIR
LPANASPVHFEGELAVVIGRPCKDVSAAQAAENILGYTIGNDVSARDQQRSDGQWTRAKGHDTFCPVGPWIVTDLNPLDP
GDLELRTEVNGEVKQRSRTSLLIHDIGSIVEWISAVMTLLPGDLILTGTPAGVGPIEDGDTVSITIEGIGTLTNPVVRKG
KS
>Mature_242_residues
MIAREIAEHPFGTPNFTGRSWPLADVRLLAPILASKVVCVGKNYADHIAEMGEATGPVPADPVIFLKPNTAIIGPNVPIR
LPANASPVHFEGELAVVIGRPCKDVSAAQAAENILGYTIGNDVSARDQQRSDGQWTRAKGHDTFCPVGPWIVTDLNPLDP
GDLELRTEVNGEVKQRSRTSLLIHDIGSIVEWISAVMTLLPGDLILTGTPAGVGPIEDGDTVSITIEGIGTLTNPVVRKG
KS

Specific function: Unknown

COG id: COG0179

COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAH family [H]

Homologues:

Organism=Homo sapiens, GI40786394, Length=226, Percent_Identity=42.4778761061947, Blast_Score=171, Evalue=4e-43,
Organism=Homo sapiens, GI156231349, Length=226, Percent_Identity=42.4778761061947, Blast_Score=171, Evalue=5e-43,
Organism=Homo sapiens, GI13654274, Length=206, Percent_Identity=41.2621359223301, Blast_Score=155, Evalue=2e-38,
Organism=Homo sapiens, GI66348062, Length=197, Percent_Identity=42.1319796954315, Blast_Score=153, Evalue=1e-37,
Organism=Homo sapiens, GI215422413, Length=202, Percent_Identity=41.0891089108911, Blast_Score=153, Evalue=2e-37,
Organism=Escherichia coli, GI1787428, Length=198, Percent_Identity=41.4141414141414, Blast_Score=154, Evalue=6e-39,
Organism=Caenorhabditis elegans, GI17557057, Length=197, Percent_Identity=39.5939086294416, Blast_Score=143, Evalue=1e-34,
Organism=Saccharomyces cerevisiae, GI6324161, Length=224, Percent_Identity=33.0357142857143, Blast_Score=118, Evalue=9e-28,
Organism=Drosophila melanogaster, GI28572127, Length=223, Percent_Identity=39.0134529147982, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI28571789, Length=206, Percent_Identity=38.3495145631068, Blast_Score=127, Evalue=5e-30,
Organism=Drosophila melanogaster, GI24663695, Length=223, Percent_Identity=34.9775784753363, Blast_Score=120, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002529
- InterPro:   IPR011234 [H]

Pfam domain/function: PF01557 FAA_hydrolase [H]

EC number: NA

Molecular weight: Translated: 25673; Mature: 25673

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAREIAEHPFGTPNFTGRSWPLADVRLLAPILASKVVCVGKNYADHIAEMGEATGPVPA
CCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEEECCCHHHHHHHHHCCCCCCCC
DPVIFLKPNTAIIGPNVPIRLPANASPVHFEGELAVVIGRPCKDVSAAQAAENILGYTIG
CCEEEECCCCEEECCCCCEEECCCCCCEEECCCEEEEECCCCCCHHHHHHHHHHHEEECC
NDVSARDQQRSDGQWTRAKGHDTFCPVGPWIVTDLNPLDPGDLELRTEVNGEVKQRSRTS
CCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHH
LLIHDIGSIVEWISAVMTLLPGDLILTGTPAGVGPIEDGDTVSITIEGIGTLTNPVVRKG
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHCC
KS
CC
>Mature Secondary Structure
MIAREIAEHPFGTPNFTGRSWPLADVRLLAPILASKVVCVGKNYADHIAEMGEATGPVPA
CCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEEECCCHHHHHHHHHCCCCCCCC
DPVIFLKPNTAIIGPNVPIRLPANASPVHFEGELAVVIGRPCKDVSAAQAAENILGYTIG
CCEEEECCCCEEECCCCCEEECCCCCCEEECCCEEEEECCCCCCHHHHHHHHHHHEEECC
NDVSARDQQRSDGQWTRAKGHDTFCPVGPWIVTDLNPLDPGDLELRTEVNGEVKQRSRTS
CCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHH
LLIHDIGSIVEWISAVMTLLPGDLILTGTPAGVGPIEDGDTVSITIEGIGTLTNPVVRKG
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHCC
KS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]