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The map label for this gene is 41408961

Identifier: 41408961

GI number: 41408961

Start: 3190148

End: 3191824

Strand: Reverse

Name: 41408961

Synonym: MAP2863c

Alternate gene names: NA

Gene position: 3191824-3190148 (Counterclockwise)

Preceding gene: 41408962

Following gene: 41408957

Centisome position: 66.09

GC content: 68.87

Gene sequence:

>1677_bases
GTGGATGTAGACCTCGCCCCGCCTGGCCCGCTGGCCGCCGGGGGGTTGCGGGTCACCGCGCTGGGCGGCATCAGCGAAAT
CGGCCGCAACATGACGGTTTTCGAGCACCTGGGCCGGCTGTTGATCATCGACTGCGGGGTGATGTTTCCCACCCACGACG
AGCCCGGCGTCGATCTGATCCTGCCGGACCTGCGGCACATCGAAGACCGGCTCGACGACATCGAGGCGCTGGTGCTCACT
CACGCGCACGAGGACCACATCGGCGGCATTCCCTACCTGCTCAAGCTGCGGCCCGACATCCCGGTCGTCGGTTCGAAATT
CACCCTGGCCCTGGTCGCCGCCAAGTGCCGCGAACACCGGCTCAAGCCGGTGTTCGTCGAGGTGTCCGAGGGACACAAGA
GCACCCACGGCGTGTTCGAATGCGAATACTTCGCCGTCAACCACTCCATCCCCGACGCGCTGGCGATCGCCGTACACACC
GGCGCCGGAACGGTTTTGCACACCGGCGACATCAAGCTCGACCAGCTTCCGCTGGACGGCCGGCCCACCGATCTGCCCGG
CATGTCGCGGCTCGGTGACGCCGGGGTCGACCTGTTCCTGTGCGATTCGACCAACGCCGAGCTGCCCGGCGTCGGCCCCT
CGGAAAGTGAAGTCGGCCCGACCCTGCACCGGCTGATCCGCGGCGCCGAGGGCCGCGTCATCGTGGCCTGCTTCGCCTCC
AACGTGGACCGGGTTCAACAGATCATCGATGCCGCAGTGGCATTGGGCCGGCGGGTGTCGTTCGTCGGCCGGTCGATGGT
GCGCAACATGGGCATCGCCCGCGAACTCGGATTTTTGCGGGTGGCCGACGCCGACGTGATCGACATAGGCGCCGCCGAGC
TGATGCCGCCGGAGCGGGTGGTGCTGATCACCACCGGCACCCAGGGCGAGCCGATGTCGGCGCTGTCGCGGATGTCGCGC
GGCGAGCACCGCAGCATCACGTTGACCGCGGGCGACCTTGTGGTGCTGGCCTCGTCGCTGATCCCGGGCAACGAGGAGGC
GGTCTACGGCGTGATCGACGAGCTCGCCAAGATCGGCGCCCGGGTGGTCACCAACGCCCAAGCGCGCGTTCATGTTTCGG
GCCACGCCTACGCCGGTGAGCTGTTGTTCCTGTACAACGGCGTCCGGCCGCGCCACGTGATGCCGGTGCACGGGACGTGG
CGGATGCTGCGGGCCAACTCCAAGCTGGCAGCCCGCACCGGCGTGCCGGAGGAGTCGATCCTGCTGGCCGAGAACGGGGT
GAGCGTCGACCTGGTCGCGGGCAGGGCCTCGATCTCCGGGGCGGTGCCGGTCGGCAAGATGTTCGTCGACGGCCTGGTCG
ACGGCGACGTCGGCGACATCACGTTGGGGGAGCGGCTGATTCTGTCGTCGGGTTTCGTGGCGGTGACGGTGGTGGTGCAG
CGCGGCACCGGGCGTCCGGTGGCGCCACCGCATCTGCATTCGCGCGGCTTCTCCGAGGACCCCAAGGCGCTCGAGCCCGC
GGTGCGCCGGGTCGAGGAGGAGCTCGAGGCGCTGGTGGCCGAGAACATCACCGACCCCAGCCGCATCGCCCAGGGGGTGC
GGCGCACCGTCGGCAAATGGGTGGGCGAAACCTACCGCCGACAGCCGATGATCGTCCCCACCGTCATCGAGGTCTAG

Upstream 100 bases:

>100_bases
CGACTGCCGCAGGTGCCGGCGACGCCCGAGCAGATCGAGGCGTTGACCGCCGACATGCGTGCGGCCTCGGTGCTCAGGTG
ACCCGGGGAGCGTCCGAGCA

Downstream 100 bases:

>100_bases
CCCCGACTCGCTCCGCCCCCGGTTCCCTTGCTCCGCGAAACTTAAAGCAGGCACGCGTTTTTCGGCGTGTCGTCGCCAAG
GTTTAAGTGTCGCGAACGCC

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
MDVDLAPPGPLAAGGLRVTALGGISEIGRNMTVFEHLGRLLIIDCGVMFPTHDEPGVDLILPDLRHIEDRLDDIEALVLT
HAHEDHIGGIPYLLKLRPDIPVVGSKFTLALVAAKCREHRLKPVFVEVSEGHKSTHGVFECEYFAVNHSIPDALAIAVHT
GAGTVLHTGDIKLDQLPLDGRPTDLPGMSRLGDAGVDLFLCDSTNAELPGVGPSESEVGPTLHRLIRGAEGRVIVACFAS
NVDRVQQIIDAAVALGRRVSFVGRSMVRNMGIARELGFLRVADADVIDIGAAELMPPERVVLITTGTQGEPMSALSRMSR
GEHRSITLTAGDLVVLASSLIPGNEEAVYGVIDELAKIGARVVTNAQARVHVSGHAYAGELLFLYNGVRPRHVMPVHGTW
RMLRANSKLAARTGVPEESILLAENGVSVDLVAGRASISGAVPVGKMFVDGLVDGDVGDITLGERLILSSGFVAVTVVVQ
RGTGRPVAPPHLHSRGFSEDPKALEPAVRRVEEELEALVAENITDPSRIAQGVRRTVGKWVGETYRRQPMIVPTVIEV

Sequences:

>Translated_558_residues
MDVDLAPPGPLAAGGLRVTALGGISEIGRNMTVFEHLGRLLIIDCGVMFPTHDEPGVDLILPDLRHIEDRLDDIEALVLT
HAHEDHIGGIPYLLKLRPDIPVVGSKFTLALVAAKCREHRLKPVFVEVSEGHKSTHGVFECEYFAVNHSIPDALAIAVHT
GAGTVLHTGDIKLDQLPLDGRPTDLPGMSRLGDAGVDLFLCDSTNAELPGVGPSESEVGPTLHRLIRGAEGRVIVACFAS
NVDRVQQIIDAAVALGRRVSFVGRSMVRNMGIARELGFLRVADADVIDIGAAELMPPERVVLITTGTQGEPMSALSRMSR
GEHRSITLTAGDLVVLASSLIPGNEEAVYGVIDELAKIGARVVTNAQARVHVSGHAYAGELLFLYNGVRPRHVMPVHGTW
RMLRANSKLAARTGVPEESILLAENGVSVDLVAGRASISGAVPVGKMFVDGLVDGDVGDITLGERLILSSGFVAVTVVVQ
RGTGRPVAPPHLHSRGFSEDPKALEPAVRRVEEELEALVAENITDPSRIAQGVRRTVGKWVGETYRRQPMIVPTVIEV
>Mature_558_residues
MDVDLAPPGPLAAGGLRVTALGGISEIGRNMTVFEHLGRLLIIDCGVMFPTHDEPGVDLILPDLRHIEDRLDDIEALVLT
HAHEDHIGGIPYLLKLRPDIPVVGSKFTLALVAAKCREHRLKPVFVEVSEGHKSTHGVFECEYFAVNHSIPDALAIAVHT
GAGTVLHTGDIKLDQLPLDGRPTDLPGMSRLGDAGVDLFLCDSTNAELPGVGPSESEVGPTLHRLIRGAEGRVIVACFAS
NVDRVQQIIDAAVALGRRVSFVGRSMVRNMGIARELGFLRVADADVIDIGAAELMPPERVVLITTGTQGEPMSALSRMSR
GEHRSITLTAGDLVVLASSLIPGNEEAVYGVIDELAKIGARVVTNAQARVHVSGHAYAGELLFLYNGVRPRHVMPVHGTW
RMLRANSKLAARTGVPEESILLAENGVSVDLVAGRASISGAVPVGKMFVDGLVDGDVGDITLGERLILSSGFVAVTVVVQ
RGTGRPVAPPHLHSRGFSEDPKALEPAVRRVEEELEALVAENITDPSRIAQGVRRTVGKWVGETYRRQPMIVPTVIEV

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 59611; Mature: 59611

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVDLAPPGPLAAGGLRVTALGGISEIGRNMTVFEHLGRLLIIDCGVMFPTHDEPGVDLI
CCCCCCCCCCCCCCCEEEEEECCHHHHCCCCHHHHHCCCEEEEECCCCCCCCCCCCCEEE
LPDLRHIEDRLDDIEALVLTHAHEDHIGGIPYLLKLRPDIPVVGSKFTLALVAAKCREHR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC
LKPVFVEVSEGHKSTHGVFECEYFAVNHSIPDALAIAVHTGAGTVLHTGDIKLDQLPLDG
CCEEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEECCEEEECCCCCC
RPTDLPGMSRLGDAGVDLFLCDSTNAELPGVGPSESEVGPTLHRLIRGAEGRVIVACFAS
CCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECC
NVDRVQQIIDAAVALGRRVSFVGRSMVRNMGIARELGFLRVADADVIDIGAAELMPPERV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCEEECCHHHCCCCCEE
VLITTGTQGEPMSALSRMSRGEHRSITLTAGDLVVLASSLIPGNEEAVYGVIDELAKIGA
EEEEECCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHCCH
RVVTNAQARVHVSGHAYAGELLFLYNGVRPRHVMPVHGTWRMLRANSKLAARTGVPEESI
HEEECCCEEEEECCCCCCCEEEEEECCCCCCEEEECCCCEEEEECCCCEEHHCCCCCCCE
LLAENGVSVDLVAGRASISGAVPVGKMFVDGLVDGDVGDITLGERLILSSGFVAVTVVVQ
EEECCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEECCCEEECCCCCEEEEEEEE
RGTGRPVAPPHLHSRGFSEDPKALEPAVRRVEEELEALVAENITDPSRIAQGVRRTVGKW
CCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VGETYRRQPMIVPTVIEV
HHHHHHCCCCCCCCEECC
>Mature Secondary Structure
MDVDLAPPGPLAAGGLRVTALGGISEIGRNMTVFEHLGRLLIIDCGVMFPTHDEPGVDLI
CCCCCCCCCCCCCCCEEEEEECCHHHHCCCCHHHHHCCCEEEEECCCCCCCCCCCCCEEE
LPDLRHIEDRLDDIEALVLTHAHEDHIGGIPYLLKLRPDIPVVGSKFTLALVAAKCREHR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC
LKPVFVEVSEGHKSTHGVFECEYFAVNHSIPDALAIAVHTGAGTVLHTGDIKLDQLPLDG
CCEEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEECCEEEECCCCCC
RPTDLPGMSRLGDAGVDLFLCDSTNAELPGVGPSESEVGPTLHRLIRGAEGRVIVACFAS
CCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECC
NVDRVQQIIDAAVALGRRVSFVGRSMVRNMGIARELGFLRVADADVIDIGAAELMPPERV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCEEECCHHHCCCCCEE
VLITTGTQGEPMSALSRMSRGEHRSITLTAGDLVVLASSLIPGNEEAVYGVIDELAKIGA
EEEEECCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHCCH
RVVTNAQARVHVSGHAYAGELLFLYNGVRPRHVMPVHGTWRMLRANSKLAARTGVPEESI
HEEECCCEEEEECCCCCCCEEEEEECCCCCCEEEECCCCEEEEECCCCEEHHCCCCCCCE
LLAENGVSVDLVAGRASISGAVPVGKMFVDGLVDGDVGDITLGERLILSSGFVAVTVVVQ
EEECCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEECCCEEECCCCCEEEEEEEE
RGTGRPVAPPHLHSRGFSEDPKALEPAVRRVEEELEALVAENITDPSRIAQGVRRTVGKW
CCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VGETYRRQPMIVPTVIEV
HHHHHHCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]