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The map label for this gene is xerD [C]

Identifier: 41408850

GI number: 41408850

Start: 3082484

End: 3083629

Strand: Direct

Name: xerD [C]

Synonym: MAP2752

Alternate gene names: 41408850

Gene position: 3082484-3083629 (Clockwise)

Preceding gene: 41408849

Following gene: 41408851

Centisome position: 63.82

GC content: 66.84

Gene sequence:

>1146_bases
ATGAGCGCCGCACTACGGCTAGTCACAGATACGGGCACTGGCACGAGCGACGGCGAGCTACCGCCATTGCAACGGTACGA
GATCTGGATGAAGGGCCGCGGCCTGTCAGCCCGCACCATCACCGACTCCATGCTGACGCTGCGGCGCCTTGAACGCGTCA
CTAGGCGGCCGGCACACGCGGTTGCGGCACTGGCGATTTCACGGTTCCTCGCCGACGAGGCGCTGGGCCCGCGGTCACGC
TACACCTACCACGTCCAGTTGGCAGGGTTCTTCCGCTGGCTGGCCAACGAAGACGGCGCCCCCAACATCATGGCGCAGAT
CCCGCGTCCGCGGCTGCCGCGCAGTGTTCCGCGACCCATCACCACTGGTCAGCTTCAAGCGCTGTTGGCGGTCCGAATGC
ACAAGCGCACCAGGGTGATGATCTTGCTGGCGGCCTTCGCCGGGCTGCGGGCCCACGAGATCGCGAAGGTGCGTGGCCAA
GACGTCGACCCGGACGCTCGGACGCTGCACGTGGTCGGCAAGGGCGGTCATGCGGCGACGATTCCGCTGCATCCGGTGCT
AGTTGAAGCGGCTGAGACGATGCCTCGTCATGGTTGGTGGTTCCCCGCCAATTCCCGGCGCCCCGGGCAGCACGTCCTGT
CTCGGGGCGTCGTCGATGCCATCGGCGATGCGATGCGCCGGGCCGGCATTCCCGGCGGCACGGCGCACCGGCTAAGGCAT
TGGTACGGAACCACTCTGGTCGCCAGCGGCACGGACCTGCGCACAGCGCAGACGCTGTTGCGGCACTCCAATCTGGCGTC
TACGGCGATCTACACAGAGGTCTATGACGACCGGCGAATTGAGGCGATCGACCGGCTGACGATACCGCTGCCCGGCGAAG
CCGAGCGGGCGCAGGACGACCGGCTGCGGCGGCAGGTGGATCGTTGTAAGCAGTCCATCATCCGCCTGCTGGGCGGCCTG
GAGCCCGGCGAGCACATGTCGCGCACGAAGCTCAGTCAAGCACTACGGTCCGACGTCCGGCCTCATATCAACGAGGCGAT
CGACGAGCTGACCGCGGGCGGCATGTTGGTCACGGTCATAGCTGGCCACGGCCGCCACTACAGGCTCGATTCCGGGTGGA
CCGACCGACCCGAATTTCACGGCTAG

Upstream 100 bases:

>100_bases
AGGAGGCCCTAGCCAACCTCTGGCGCGGCATTCAACCTCGCTGCGCCCACTGCGGAAGAGTGTTCAACAGCTTCCAAGAC
GCGGTCAGGATCACCGCGAT

Downstream 100 bases:

>100_bases
CGGCCGGCGCGGACAGCTGTCCCGGACAAGTTTCCCGGACAGCTGTCACCCGCCGGTGCAACCATTAGACGCGAACCAAA
CAGGAGACCCAATATGGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MSAALRLVTDTGTGTSDGELPPLQRYEIWMKGRGLSARTITDSMLTLRRLERVTRRPAHAVAALAISRFLADEALGPRSR
YTYHVQLAGFFRWLANEDGAPNIMAQIPRPRLPRSVPRPITTGQLQALLAVRMHKRTRVMILLAAFAGLRAHEIAKVRGQ
DVDPDARTLHVVGKGGHAATIPLHPVLVEAAETMPRHGWWFPANSRRPGQHVLSRGVVDAIGDAMRRAGIPGGTAHRLRH
WYGTTLVASGTDLRTAQTLLRHSNLASTAIYTEVYDDRRIEAIDRLTIPLPGEAERAQDDRLRRQVDRCKQSIIRLLGGL
EPGEHMSRTKLSQALRSDVRPHINEAIDELTAGGMLVTVIAGHGRHYRLDSGWTDRPEFHG

Sequences:

>Translated_381_residues
MSAALRLVTDTGTGTSDGELPPLQRYEIWMKGRGLSARTITDSMLTLRRLERVTRRPAHAVAALAISRFLADEALGPRSR
YTYHVQLAGFFRWLANEDGAPNIMAQIPRPRLPRSVPRPITTGQLQALLAVRMHKRTRVMILLAAFAGLRAHEIAKVRGQ
DVDPDARTLHVVGKGGHAATIPLHPVLVEAAETMPRHGWWFPANSRRPGQHVLSRGVVDAIGDAMRRAGIPGGTAHRLRH
WYGTTLVASGTDLRTAQTLLRHSNLASTAIYTEVYDDRRIEAIDRLTIPLPGEAERAQDDRLRRQVDRCKQSIIRLLGGL
EPGEHMSRTKLSQALRSDVRPHINEAIDELTAGGMLVTVIAGHGRHYRLDSGWTDRPEFHG
>Mature_380_residues
SAALRLVTDTGTGTSDGELPPLQRYEIWMKGRGLSARTITDSMLTLRRLERVTRRPAHAVAALAISRFLADEALGPRSRY
TYHVQLAGFFRWLANEDGAPNIMAQIPRPRLPRSVPRPITTGQLQALLAVRMHKRTRVMILLAAFAGLRAHEIAKVRGQD
VDPDARTLHVVGKGGHAATIPLHPVLVEAAETMPRHGWWFPANSRRPGQHVLSRGVVDAIGDAMRRAGIPGGTAHRLRHW
YGTTLVASGTDLRTAQTLLRHSNLASTAIYTEVYDDRRIEAIDRLTIPLPGEAERAQDDRLRRQVDRCKQSIIRLLGGLE
PGEHMSRTKLSQALRSDVRPHINEAIDELTAGGMLVTVIAGHGRHYRLDSGWTDRPEFHG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=210, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42293; Mature: 42162

Theoretical pI: Translated: 11.30; Mature: 11.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAALRLVTDTGTGTSDGELPPLQRYEIWMKGRGLSARTITDSMLTLRRLERVTRRPAHA
CCCEEEEEEECCCCCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
VAALAISRFLADEALGPRSRYTYHVQLAGFFRWLANEDGAPNIMAQIPRPRLPRSVPRPI
HHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCC
TTGQLQALLAVRMHKRTRVMILLAAFAGLRAHEIAKVRGQDVDPDARTLHVVGKGGHAAT
CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEE
IPLHPVLVEAAETMPRHGWWFPANSRRPGQHVLSRGVVDAIGDAMRRAGIPGGTAHRLRH
CCCHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
WYGTTLVASGTDLRTAQTLLRHSNLASTAIYTEVYDDRRIEAIDRLTIPLPGEAERAQDD
HHCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHEECCCCCCHHHHHHH
RLRRQVDRCKQSIIRLLGGLEPGEHMSRTKLSQALRSDVRPHINEAIDELTAGGMLVTVI
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEE
AGHGRHYRLDSGWTDRPEFHG
ECCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure 
SAALRLVTDTGTGTSDGELPPLQRYEIWMKGRGLSARTITDSMLTLRRLERVTRRPAHA
CCEEEEEEECCCCCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
VAALAISRFLADEALGPRSRYTYHVQLAGFFRWLANEDGAPNIMAQIPRPRLPRSVPRPI
HHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCC
TTGQLQALLAVRMHKRTRVMILLAAFAGLRAHEIAKVRGQDVDPDARTLHVVGKGGHAAT
CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEE
IPLHPVLVEAAETMPRHGWWFPANSRRPGQHVLSRGVVDAIGDAMRRAGIPGGTAHRLRH
CCCHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
WYGTTLVASGTDLRTAQTLLRHSNLASTAIYTEVYDDRRIEAIDRLTIPLPGEAERAQDD
HHCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHEECCCCCCHHHHHHH
RLRRQVDRCKQSIIRLLGGLEPGEHMSRTKLSQALRSDVRPHINEAIDELTAGGMLVTVI
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEE
AGHGRHYRLDSGWTDRPEFHG
ECCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA