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The map label for this gene is pdxS [H]

Identifier: 41408808

GI number: 41408808

Start: 3045772

End: 3046683

Strand: Reverse

Name: pdxS [H]

Synonym: MAP2710c

Alternate gene names: 41408808

Gene position: 3046683-3045772 (Counterclockwise)

Preceding gene: 41408809

Following gene: 41408807

Centisome position: 63.08

GC content: 69.3

Gene sequence:

>912_bases
GTGAACACCGCCCATTCACCGGACGGCAGCGGGCGAACCGGGACCGCGCGGGTCAAGCGCGGCATGGCCGAGATGCTCAA
GGGCGGCGTCATCATGGACGTCGTCACCCCCGAGCAGGCCAAGATCGCCGAGGGCGCCGGCGCCGTCGCCGTGATGGCCC
TCGAGCGGGTGCCCGCCGACATCCGCGCCCAGGGCGGGGTGTCGCGGATGAGCGACCCGGACATGATCGAGGGCATCATC
TCCGCGGTCACCATCCCGGTGATGGCCAAGGCCCGCATCGGGCATTTCGTCGAGGCGCAGATCCTGCAGAGCCTGGGCGT
GGACTACATCGACGAGTCCGAGGTGCTCACCCCCGCCGACTACACCCACCACATCGACAAGTGGAAGTTCACCGTGCCGT
TCGTGTGCGGGGCGACCAACCTGGGCGAGGCGTTAAGACGCATCAACGAGGGCGCGGCGATGATCCGCTCCAAGGGTGAG
GCCGGCACCGGCGACGTCTCCAACGCCACCACCCACATGCGGGCCATCGGCGGCGAGATCCGCCGCCTGATGTCGCTGTC
GGAAGACGAGTTGTACGTCGCCGCAAAGGAATTGCAGGCCCCCTACGAACTGGTCGTGGAGGTGGCCCGGGCCGGCAAGC
TGCCGGTCACCCTGTTCACCGCCGGCGGCATCGCCACCCCGGCCGACGCGGCGATGATGATGCAGCTCGGCGCCGAGGGC
GTGTTCGTCGGCTCCGGCATCTTCAAGTCCGGCGACCCCGCCCAGCGCGCCGCCGCGATCGTCAAGGCCACCACCTTCTA
CGACGACCCCGACGTGCTGGCCAAGGTGTCACGCGGGCTGGGCGAGGCGATGGTCGGCATCAACGTCGAGCAGATCGCGC
AGCCCGAACGGCTGGCGGAACGCGGCTGGTAA

Upstream 100 bases:

>100_bases
CACCCCCGGCCCGCTGCTGTCGATCCGCTGACTCCGCCGGTCAACGCGGGGCCGGGTCGCCTCGCTAGACTGGGTCGACA
ACGTTGAAGGAGATCGAGCA

Downstream 100 bases:

>100_bases
GAACAATCCGTGTCGATCGAGCAGATCCTTGATCTCGAGCAACTCGAGGTCAACATCTACCGCGGGGGCGTCTTCAGCCC
GGATTCCGGATATTTCCAGC

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNTAHSPDGSGRTGTARVKRGMAEMLKGGVIMDVVTPEQAKIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGII
SAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGE
AGTGDVSNATTHMRAIGGEIRRLMSLSEDELYVAAKELQAPYELVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEG
VFVGSGIFKSGDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEQIAQPERLAERGW

Sequences:

>Translated_303_residues
MNTAHSPDGSGRTGTARVKRGMAEMLKGGVIMDVVTPEQAKIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGII
SAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGE
AGTGDVSNATTHMRAIGGEIRRLMSLSEDELYVAAKELQAPYELVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEG
VFVGSGIFKSGDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEQIAQPERLAERGW
>Mature_303_residues
MNTAHSPDGSGRTGTARVKRGMAEMLKGGVIMDVVTPEQAKIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGII
SAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGE
AGTGDVSNATTHMRAIGGEIRRLMSLSEDELYVAAKELQAPYELVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEG
VFVGSGIFKSGDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEQIAQPERLAERGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=291, Percent_Identity=64.2611683848797, Blast_Score=379, Evalue=1e-106,
Organism=Saccharomyces cerevisiae, GI6321049, Length=294, Percent_Identity=64.9659863945578, Blast_Score=369, Evalue=1e-103,
Organism=Saccharomyces cerevisiae, GI6323996, Length=294, Percent_Identity=64.6258503401361, Blast_Score=369, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 31964; Mature: 31964

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTAHSPDGSGRTGTARVKRGMAEMLKGGVIMDVVTPEQAKIAEGAGAVAVMALERVPAD
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCCHHHHHHHHHCCHH
IRAQGGVSRMSDPDMIEGIISAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPAD
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
YTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRAIGGEI
HHHHCCCEEEEECEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
RRLMSLSEDELYVAAKELQAPYELVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEG
HHHHHCCCCHHHEEHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCE
VFVGSGIFKSGDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEQIAQPERLAE
EEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHH
RGW
CCC
>Mature Secondary Structure
MNTAHSPDGSGRTGTARVKRGMAEMLKGGVIMDVVTPEQAKIAEGAGAVAVMALERVPAD
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCCHHHHHHHHHCCHH
IRAQGGVSRMSDPDMIEGIISAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPAD
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
YTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRAIGGEI
HHHHCCCEEEEECEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
RRLMSLSEDELYVAAKELQAPYELVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEG
HHHHHCCCCHHHEEHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCE
VFVGSGIFKSGDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEQIAQPERLAE
EEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHH
RGW
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA