Definition Mycobacterium avium subsp. paratuberculosis K-10, complete genome.
Accession NC_002944
Length 4,829,781

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The map label for this gene is ksdI [H]

Identifier: 41408803

GI number: 41408803

Start: 3041684

End: 3042067

Strand: Reverse

Name: ksdI [H]

Synonym: MAP2705c

Alternate gene names: 41408803

Gene position: 3042067-3041684 (Counterclockwise)

Preceding gene: 41408804

Following gene: 41408801

Centisome position: 62.99

GC content: 66.67

Gene sequence:

>384_bases
ATGCCGAATGACGCCAAGACCGACGCGATCAGGAACACGGTCCACCGCTACATCGAACTGGTCGCCAAAGGCGGCGCCGA
CGACTTGGTCGAGCTGTACGCCGACGACGCCACCGTCGAGGACCCGGTCGGCGGCGAGGTACACATCGGCCGCCAGGCCA
TCCACGGCTTCTACTCCGCGCTCGACAACCTGCAGCGCGAATGCGAGCTGCTGACGCTGCGGGTGGCCGGCAACGAGGCG
GCGTTCCACTTCCGGCTGACCGTGACCGCAGGCGAGCACCGGATGGTGATCGAGCCGATCGACGTGATGGTGTTCGACGG
CAATGGGAAGGTCGCCGCGATGAAGGCCTACTGGTCCCCGGACGACGACGTCAGCCGGCCGTAA

Upstream 100 bases:

>100_bases
ATGCCGCGGCCGGGTCTGCGACCTGCCGGTGACCCGCACACCCGAACTGGCCGCCGCCCTGGGTGCGCCCTCGCCCTGAC
CGCGAGATACCCTGCGTCGC

Downstream 100 bases:

>100_bases
CCCGGACGATCAGGGCGTGGCCAGCCACGCATGGTCGCCGGTGTAGAACACGGCGAACCACATGGCGATGTAGTGCAGGA
TCGCCGCGATCGCGGTGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: Delta(5)-3-ketosteroid isomerase [H]

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MPNDAKTDAIRNTVHRYIELVAKGGADDLVELYADDATVEDPVGGEVHIGRQAIHGFYSALDNLQRECELLTLRVAGNEA
AFHFRLTVTAGEHRMVIEPIDVMVFDGNGKVAAMKAYWSPDDDVSRP

Sequences:

>Translated_127_residues
MPNDAKTDAIRNTVHRYIELVAKGGADDLVELYADDATVEDPVGGEVHIGRQAIHGFYSALDNLQRECELLTLRVAGNEA
AFHFRLTVTAGEHRMVIEPIDVMVFDGNGKVAAMKAYWSPDDDVSRP
>Mature_126_residues
PNDAKTDAIRNTVHRYIELVAKGGADDLVELYADDATVEDPVGGEVHIGRQAIHGFYSALDNLQRECELLTLRVAGNEAA
FHFRLTVTAGEHRMVIEPIDVMVFDGNGKVAAMKAYWSPDDDVSRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002075 [H]

Pfam domain/function: PF02136 NTF2 [H]

EC number: =5.3.3.1 [H]

Molecular weight: Translated: 13983; Mature: 13852

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNDAKTDAIRNTVHRYIELVAKGGADDLVELYADDATVEDPVGGEVHIGRQAIHGFYSA
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHH
LDNLQRECELLTLRVAGNEAAFHFRLTVTAGEHRMVIEPIDVMVFDGNGKVAAMKAYWSP
HHHHHHHEEEEEEEEECCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEEEECCC
DDDVSRP
CCCCCCC
>Mature Secondary Structure 
PNDAKTDAIRNTVHRYIELVAKGGADDLVELYADDATVEDPVGGEVHIGRQAIHGFYSA
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHH
LDNLQRECELLTLRVAGNEAAFHFRLTVTAGEHRMVIEPIDVMVFDGNGKVAAMKAYWSP
HHHHHHHEEEEEEEEECCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEEEECCC
DDDVSRP
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7596291 [H]