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The map label for this gene is xseB

Identifier: 41408785

GI number: 41408785

Start: 3022355

End: 3022603

Strand: Direct

Name: xseB

Synonym: MAP2687

Alternate gene names: 41408785

Gene position: 3022355-3022603 (Clockwise)

Preceding gene: 41408784

Following gene: 41408786

Centisome position: 62.58

GC content: 61.45

Gene sequence:

>249_bases
ATGGCGAATAACAAGAAGGACGAGCAGGCCGCCGCGGCTACACCTATTAGTCGACTGGGCTATGAGGCGTGCCGGGACGA
ACTGATCGAGGTCGTGCGGCAACTGGAACAGGGCGGCCTGGACCTGGATGCATCGCTGAATTTGTGGGAAAGAGGCGAGC
AGCTGGCGAAACGCTGTGAAGAGCACTTAGCTGGAGCGCGCAAGCGAATCGAAGACGCCCTCGCCGCGGGCGAGGCTGAC
GACGACTGA

Upstream 100 bases:

>100_bases
CCTCACGTGCTGCGTTCGGTGGGCGACGCGCCGGCGGGCACCCGGCTGCGGGTCCGGGTCGCCGACGGCGCCGTGGCGGC
GCTGAGCGAGGGACCGACCG

Downstream 100 bases:

>100_bases
ATTCGACCCTATTGGAGAGCTTCGTTGCCACACTTTTTCGAAACTGGAACACGTTTCAGTTATGATCGGCCCCATGGGTG
ATCCATCGCTGACGGCCGAA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 82; Mature: 81

Protein sequence:

>82_residues
MANNKKDEQAAAATPISRLGYEACRDELIEVVRQLEQGGLDLDASLNLWERGEQLAKRCEEHLAGARKRIEDALAAGEAD
DD

Sequences:

>Translated_82_residues
MANNKKDEQAAAATPISRLGYEACRDELIEVVRQLEQGGLDLDASLNLWERGEQLAKRCEEHLAGARKRIEDALAAGEAD
DD
>Mature_81_residues
ANNKKDEQAAAATPISRLGYEACRDELIEVVRQLEQGGLDLDASLNLWERGEQLAKRCEEHLAGARKRIEDALAAGEADD
D

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_MYCA1 (A0QC35)

Other databases:

- EMBL:   CP000479
- RefSeq:   YP_880473.1
- ProteinModelPortal:   A0QC35
- SMR:   A0QC35
- STRING:   A0QC35
- EnsemblBacteria:   EBMYCT00000012866
- GeneID:   4527039
- GenomeReviews:   CP000479_GR
- KEGG:   mav:MAV_1227
- TIGR:   MAV_1227
- eggNOG:   COG1722
- GeneTree:   EBGT00050000017079
- HOGENOM:   HBG728416
- OMA:   TSLKLWE
- ProtClustDB:   PRK00977
- BioCyc:   MAVI243243:MAV_1227-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9023; Mature: 8892

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANNKKDEQAAAATPISRLGYEACRDELIEVVRQLEQGGLDLDASLNLWERGEQLAKRCE
CCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
EHLAGARKRIEDALAAGEADDD
HHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ANNKKDEQAAAATPISRLGYEACRDELIEVVRQLEQGGLDLDASLNLWERGEQLAKRCE
CCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
EHLAGARKRIEDALAAGEADDD
HHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA