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The map label for this gene is dapE

Identifier: 41408672

GI number: 41408672

Start: 2894718

End: 2895782

Strand: Reverse

Name: dapE

Synonym: MAP2574c

Alternate gene names: 41408672

Gene position: 2895782-2894718 (Counterclockwise)

Preceding gene: 41408673

Following gene: 41408670

Centisome position: 59.96

GC content: 72.86

Gene sequence:

>1065_bases
GTGCTGGACTTGACCGGGGACCCGGTTGCGCTGACCGCGGCGCTGGTGGACATCCCCAGCGAATCGCGCGACGAGGCGCG
GCTGGCCGACGAGGTCGAGGCCGCGCTGCGGTCCCAGACGTCCGGTTTCGAGATCGTGCGCAACGGCAACGCCGTGCTGG
CCCGCACCGACCGCGGGCGGCGGTCGCGGGTGCTGCTGGCCGGGCACCTGGACACCGTGCCGGTCGCCGGGAACCTGCCC
AGTCGCCGCGAGGACGGCGACCTGTACGGCTGCGGCACGGCGGACATGAAATCCGGGGATGCCGTCTTCCTGCATCTGGC
CGCCACCGTCGCCGACCCGGCGCACGATCTGACGCTGGTCATGTACGACTGCGAGGAAATCGACGCCGCCGCAAACGGAT
TGGGTCGCATCCAGCGCGAGCTGCCGGACTGGCTGTCCGCCGACGTCGCGATCCTGGGCGAGCCCACCGGCGGCTACATC
GAGGCCGGCTGCCAGGGCACGCTGCGGGTGGTGGTCAGCGCCGCCGGAACCCGCGCCCATTCGGCACGATCCTGGTTGGG
CGACAACGCCATTCACAAACTGGGCGCCGTGCTGCAGCGGCTGGCCGGCTATCAGGCCCGCAGCGTCGACATCGACGGCT
GCACCTACCGTGAGGGCCTGTCGGCGGTGCGGATCGACGGCGGGGTGGCGGGCAACGTCATTCCGGACGCGGCGGCGGTG
ACGGTCAACTTCCGCTTCGCACCCGACCGGTCGCCGGCCGAGGCGCTGCAGCATGTGCGCGACGTGCTCGACGGCCTCGA
CGTGCACATCGAACAGACCGACGCCGCCGCGGGCGCGCTGCCCGGGCTGTCCCAGCCCGCCGCCAAGGCACTGGTCGAGG
CCGCCGGCGGCCGGGTTAGGGCCAAATACGGCTGGACCGACGTGGCGCGCTTCGCCGCGCTGGGCATACCGGCGCTCAAC
TTCGGCCCCGGGGATCCCAACCTCGCGCACCGGCGCGACGAACGGGTGGCGGTCGCCGCCATCACCGCCGCGGCGGACCT
GCTGCGCGGCTACCTGAGCGGCTGA

Upstream 100 bases:

>100_bases
CCGCGGTACGGCGTCAAACCCAAGGTGATGCCCACCCGGTTGCCGGTCTGACCGGCGGCGCGGGGCATCGCGGCCAGGGT
CCAGCCACTACCCTGGGAGC

Downstream 100 bases:

>100_bases
GCCGCCGCGCCCCGGCGCGCCTGCGCGGCGGCGTCCGCGGCCGCGGCGCGCATCCCGATCGACGTCAGCTCCCCCGACAC
CGCCAGCAGCGCCGCTTCGT

Product: succinyl-diaminopimelate desuccinylase

Products: NA

Alternate protein names: SDAP desuccinylase [H]

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MLDLTGDPVALTAALVDIPSESRDEARLADEVEAALRSQTSGFEIVRNGNAVLARTDRGRRSRVLLAGHLDTVPVAGNLP
SRREDGDLYGCGTADMKSGDAVFLHLAATVADPAHDLTLVMYDCEEIDAAANGLGRIQRELPDWLSADVAILGEPTGGYI
EAGCQGTLRVVVSAAGTRAHSARSWLGDNAIHKLGAVLQRLAGYQARSVDIDGCTYREGLSAVRIDGGVAGNVIPDAAAV
TVNFRFAPDRSPAEALQHVRDVLDGLDVHIEQTDAAAGALPGLSQPAAKALVEAAGGRVRAKYGWTDVARFAALGIPALN
FGPGDPNLAHRRDERVAVAAITAAADLLRGYLSG

Sequences:

>Translated_354_residues
MLDLTGDPVALTAALVDIPSESRDEARLADEVEAALRSQTSGFEIVRNGNAVLARTDRGRRSRVLLAGHLDTVPVAGNLP
SRREDGDLYGCGTADMKSGDAVFLHLAATVADPAHDLTLVMYDCEEIDAAANGLGRIQRELPDWLSADVAILGEPTGGYI
EAGCQGTLRVVVSAAGTRAHSARSWLGDNAIHKLGAVLQRLAGYQARSVDIDGCTYREGLSAVRIDGGVAGNVIPDAAAV
TVNFRFAPDRSPAEALQHVRDVLDGLDVHIEQTDAAAGALPGLSQPAAKALVEAAGGRVRAKYGWTDVARFAALGIPALN
FGPGDPNLAHRRDERVAVAAITAAADLLRGYLSG
>Mature_354_residues
MLDLTGDPVALTAALVDIPSESRDEARLADEVEAALRSQTSGFEIVRNGNAVLARTDRGRRSRVLLAGHLDTVPVAGNLP
SRREDGDLYGCGTADMKSGDAVFLHLAATVADPAHDLTLVMYDCEEIDAAANGLGRIQRELPDWLSADVAILGEPTGGYI
EAGCQGTLRVVVSAAGTRAHSARSWLGDNAIHKLGAVLQRLAGYQARSVDIDGCTYREGLSAVRIDGGVAGNVIPDAAAV
TVNFRFAPDRSPAEALQHVRDVLDGLDVHIEQTDAAAGALPGLSQPAAKALVEAAGGRVRAKYGWTDVARFAALGIPALN
FGPGDPNLAHRRDERVAVAAITAAADLLRGYLSG

Specific function: Displays A Broad Specificity And Can Also Deacylate Substrates Such As Acetylarginine, Acetylhistidine Or Acetylglutamate Semialdehyde. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1790395, Length=369, Percent_Identity=27.10027100271, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR002933
- InterPro:   IPR011650
- InterPro:   IPR010174 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.18 [H]

Molecular weight: Translated: 36978; Mature: 36978

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLTGDPVALTAALVDIPSESRDEARLADEVEAALRSQTSGFEIVRNGNAVLARTDRGR
CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCC
RSRVLLAGHLDTVPVAGNLPSRREDGDLYGCGTADMKSGDAVFLHLAATVADPAHDLTLV
CCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEEHHCCCCCCEEEE
MYDCEEIDAAANGLGRIQRELPDWLSADVAILGEPTGGYIEAGCQGTLRVVVSAAGTRAH
EECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCEEEEEEECCCCCHH
SARSWLGDNAIHKLGAVLQRLAGYQARSVDIDGCTYREGLSAVRIDGGVAGNVIPDAAAV
HHHHHHCCHHHHHHHHHHHHHCCCCCCEECCCCCCHHHCCCEEEECCCCCCCCCCCCEEE
TVNFRFAPDRSPAEALQHVRDVLDGLDVHIEQTDAAAGALPGLSQPAAKALVEAAGGRVR
EEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHCCCCCCCCHHHHHHHHHCCCEEE
AKYGWTDVARFAALGIPALNFGPGDPNLAHRRDERVAVAAITAAADLLRGYLSG
EECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDLTGDPVALTAALVDIPSESRDEARLADEVEAALRSQTSGFEIVRNGNAVLARTDRGR
CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCC
RSRVLLAGHLDTVPVAGNLPSRREDGDLYGCGTADMKSGDAVFLHLAATVADPAHDLTLV
CCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEEHHCCCCCCEEEE
MYDCEEIDAAANGLGRIQRELPDWLSADVAILGEPTGGYIEAGCQGTLRVVVSAAGTRAH
EECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCEEEEEEECCCCCHH
SARSWLGDNAIHKLGAVLQRLAGYQARSVDIDGCTYREGLSAVRIDGGVAGNVIPDAAAV
HHHHHHCCHHHHHHHHHHHHHCCCCCCEECCCCCCHHHCCCEEEECCCCCCCCCCCCEEE
TVNFRFAPDRSPAEALQHVRDVLDGLDVHIEQTDAAAGALPGLSQPAAKALVEAAGGRVR
EEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHCCCCCCCCHHHHHHHHHCCCEEE
AKYGWTDVARFAALGIPALNFGPGDPNLAHRRDERVAVAAITAAADLLRGYLSG
EECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7881553; 12948626; 7592354 [H]