| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41408252
Identifier: 41408252
GI number: 41408252
Start: 2386896
End: 2387471
Strand: Reverse
Name: 41408252
Synonym: MAP2154c
Alternate gene names: NA
Gene position: 2387471-2386896 (Counterclockwise)
Preceding gene: 41408257
Following gene: 41408250
Centisome position: 49.43
GC content: 60.07
Gene sequence:
>576_bases GTGCATCAAACACGGGGCGATTCAAAGTCTGAATTTCCGGGGCTCAGATGGCCGCTGCGGCGTTTTCAGCCGGTGGGTGG GGCGGGTTTGCACCCGCTTGTCGGACCAGGGTTGAGATGGCGCTTAGGCTGCACCGTCCGATGTGACGAGTTGGCGGGTC AGCACCTCAAGGCGGCCAAAATCCTTATTAAGTCGGTCTCGAATTTCGGTGTATGTCTCGATGGGGTCGCTGTCGACGAG GTCTTTCCAAAGCTGAGCGACTGTCCGTATGGCATCCAGAGTCGAGGAAATTCCGGCGTCAGTGGTCAACAGCCAGGCTC GAATCGCAAGCTGTTCAACCTTATTGAGCTGCGGCGTGTGCTCATCGCGTACCTGCAAGGCCTTGTTGAACCGCTCATTA GCCGAGACCTCCGGCCGCTGCCTATCGGTTTTGTACTCGTCTGCCGCTGTCGCGAGTTTGTATGCGGCCTTATCCGTCGC CCAACGCTCACCAAGCAGGTTGGCGACCTCCTCGCGCAGTCGGTCGTTGCGCTCGGCCGCCCGATCGGCACGCCCTTCGG CCCGAGTGGTGTCTAG
Upstream 100 bases:
>100_bases ACTCGTCGCGATGGTCCACGACCAGACGGACAGCCTTGCTCTTCGTTGCTTCGTCGTACTTCTTCGGCATGATGCGCCTT ACCTTCCCTCGAAAGAAGGT
Downstream 100 bases:
>100_bases CTGCTCTCTGTGACGCTTGTCTGCGTTCCTATTGGTGCACCAAACCCCGACCAGTCCGCCGACGAATAGCACACCCGAGC CGACAAGCCCGAGTACCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 191; Mature: 191
Protein sequence:
>191_residues MHQTRGDSKSEFPGLRWPLRRFQPVGGAGLHPLVGPGLRWRLGCTVRCDELAGQHLKAAKILIKSVSNFGVCLDGVAVDE VFPKLSDCPYGIQSRGNSGVSGQQPGSNRKLFNLIELRRVLIAYLQGLVEPLISRDLRPLPIGFVLVCRCREFVCGLIRR PTLTKQVGDLLAQSVVALGRPIGTPFGPSGV
Sequences:
>Translated_191_residues MHQTRGDSKSEFPGLRWPLRRFQPVGGAGLHPLVGPGLRWRLGCTVRCDELAGQHLKAAKILIKSVSNFGVCLDGVAVDE VFPKLSDCPYGIQSRGNSGVSGQQPGSNRKLFNLIELRRVLIAYLQGLVEPLISRDLRPLPIGFVLVCRCREFVCGLIRR PTLTKQVGDLLAQSVVALGRPIGTPFGPSGV >Mature_191_residues MHQTRGDSKSEFPGLRWPLRRFQPVGGAGLHPLVGPGLRWRLGCTVRCDELAGQHLKAAKILIKSVSNFGVCLDGVAVDE VFPKLSDCPYGIQSRGNSGVSGQQPGSNRKLFNLIELRRVLIAYLQGLVEPLISRDLRPLPIGFVLVCRCREFVCGLIRR PTLTKQVGDLLAQSVVALGRPIGTPFGPSGV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20748; Mature: 20748
Theoretical pI: Translated: 10.53; Mature: 10.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHQTRGDSKSEFPGLRWPLRRFQPVGGAGLHPLVGPGLRWRLGCTVRCDELAGQHLKAAK CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEECCEEEHHHHHCHHHHHHH ILIKSVSNFGVCLDGVAVDEVFPKLSDCPYGIQSRGNSGVSGQQPGSNRKLFNLIELRRV HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHH LIAYLQGLVEPLISRDLRPLPIGFVLVCRCREFVCGLIRRPTLTKQVGDLLAQSVVALGR HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC PIGTPFGPSGV CCCCCCCCCCC >Mature Secondary Structure MHQTRGDSKSEFPGLRWPLRRFQPVGGAGLHPLVGPGLRWRLGCTVRCDELAGQHLKAAK CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEECCEEEHHHHHCHHHHHHH ILIKSVSNFGVCLDGVAVDEVFPKLSDCPYGIQSRGNSGVSGQQPGSNRKLFNLIELRRV HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHH LIAYLQGLVEPLISRDLRPLPIGFVLVCRCREFVCGLIRRPTLTKQVGDLLAQSVVALGR HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC PIGTPFGPSGV CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA