| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41408160
Identifier: 41408160
GI number: 41408160
Start: 2270041
End: 2270994
Strand: Direct
Name: 41408160
Synonym: MAP2062
Alternate gene names: NA
Gene position: 2270041-2270994 (Clockwise)
Preceding gene: 41408159
Following gene: 41408162
Centisome position: 47.0
GC content: 69.71
Gene sequence:
>954_bases CTGAGCCTCGGCGCGAAGACTCGGGTTGCCGGCGTCGATACACACGGAAGAGAGCTAGTGGGCAGAACGGACATCGCGAC GGTGCTCGCGGTCGCGGCCGCCCTCATGGTGGGCGCGGGCGACGTCGCCCAACAGCAATCGGCTCAGCAGGTCACGGATC AACCGGTCGGCACCGTCGCGCTGTTTCGCCGGCTGCTGCGGGACCGGCGCTGGTGGACCGGAAGCCTGGTGGCCGCCGGC GGATTCGGCTTTCAGGCTGCAGCGCTGGGTTTCGGCTCGGTGGTACTGGTGCAGGCGCTGTTGGTGACGTCGTTGCTGTT CGCCCTGCTGATCAGCGCGCGGGTGAACCACCGCAGAATCACTGGGCGGCAAGCGGTTTGGGCGCTACTGCTGGCCGCCG CCGTCGCGGTGGTGGTCACGGTGGGCGACCCGCAGGAGGGAACCCCGCGGGGATCGCTGCAGACGTGGACGATCGTGGCA CTGGTCATGGGGCCGGCGCTGGTTGGGTGCGTGCTCGGCGCACGCCTGTATCCCGGCCCGGTCGCCGCGTTGTTGCTCGG CCTGATGTCCGGTTCGCTGTGGGGCCTGTTTGCGGTGCTGACCAAGGGCGTGGTCGACCAACTCGACCGCGGCATCCCGG CATTGCTGCGCACACCCGAGCTGTATGTGTGGGTGCTGCTGGCCATCGCGGCCACCGCCTGGGAGCAGTCGGCGTTCCGG GCCGGCCCGCTGACGGCGTCGCTTCCGGCGGTGACCGTCGCCGAGCCGGTCATCGGGTCGGTGCTCGGCGTCACCGTGCT CGGTGAAACGTTGCGGACCAACGGCATTGGCCTGGTGGCACTGGGCATCTCGGTGGCGGTGATGGCGGCCGCGACGGTGG CGCTGGCCCGCAGCCAGGCCGCATCGGCCCCAACAGCTGACGAAACTCCGCCGTTCTCAACGGAAAAGACGTGA
Upstream 100 bases:
>100_bases TGTGGTGGGACAAGCCGTGGCCGATGCGGATCGCCGCCCTGGCCCGGCTGCCGCTGCAGATTCCGATGATCACCACGGCG CTCAGGATTCGGCGCAACAG
Downstream 100 bases:
>100_bases TCAGCTGCGCGGCGAGCCGACCCGGTGCGCGGTGCCGTCGGGGTCCACGTAGGCGAATTCGCGCAAACCGTACGGTGTGT CGTGCGGAGCCAACAGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: ORFX [H]
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MSLGAKTRVAGVDTHGRELVGRTDIATVLAVAAALMVGAGDVAQQQSAQQVTDQPVGTVALFRRLLRDRRWWTGSLVAAG GFGFQAAALGFGSVVLVQALLVTSLLFALLISARVNHRRITGRQAVWALLLAAAVAVVVTVGDPQEGTPRGSLQTWTIVA LVMGPALVGCVLGARLYPGPVAALLLGLMSGSLWGLFAVLTKGVVDQLDRGIPALLRTPELYVWVLLAIAATAWEQSAFR AGPLTASLPAVTVAEPVIGSVLGVTVLGETLRTNGIGLVALGISVAVMAAATVALARSQAASAPTADETPPFSTEKT
Sequences:
>Translated_317_residues MSLGAKTRVAGVDTHGRELVGRTDIATVLAVAAALMVGAGDVAQQQSAQQVTDQPVGTVALFRRLLRDRRWWTGSLVAAG GFGFQAAALGFGSVVLVQALLVTSLLFALLISARVNHRRITGRQAVWALLLAAAVAVVVTVGDPQEGTPRGSLQTWTIVA LVMGPALVGCVLGARLYPGPVAALLLGLMSGSLWGLFAVLTKGVVDQLDRGIPALLRTPELYVWVLLAIAATAWEQSAFR AGPLTASLPAVTVAEPVIGSVLGVTVLGETLRTNGIGLVALGISVAVMAAATVALARSQAASAPTADETPPFSTEKT >Mature_316_residues SLGAKTRVAGVDTHGRELVGRTDIATVLAVAAALMVGAGDVAQQQSAQQVTDQPVGTVALFRRLLRDRRWWTGSLVAAGG FGFQAAALGFGSVVLVQALLVTSLLFALLISARVNHRRITGRQAVWALLLAAAVAVVVTVGDPQEGTPRGSLQTWTIVAL VMGPALVGCVLGARLYPGPVAALLLGLMSGSLWGLFAVLTKGVVDQLDRGIPALLRTPELYVWVLLAIAATAWEQSAFRA GPLTASLPAVTVAEPVIGSVLGVTVLGETLRTNGIGLVALGISVAVMAAATVALARSQAASAPTADETPPFSTEKT
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008521 [H]
Pfam domain/function: PF05653 DUF803 [H]
EC number: NA
Molecular weight: Translated: 32537; Mature: 32405
Theoretical pI: Translated: 10.63; Mature: 10.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLGAKTRVAGVDTHGRELVGRTDIATVLAVAAALMVGAGDVAQQQSAQQVTDQPVGTVA CCCCCCCEEECCCCCCHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHH LFRRLLRDRRWWTGSLVAAGGFGFQAAALGFGSVVLVQALLVTSLLFALLISARVNHRRI HHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH TGRQAVWALLLAAAVAVVVTVGDPQEGTPRGSLQTWTIVALVMGPALVGCVLGARLYPGP HHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH VAALLLGLMSGSLWGLFAVLTKGVVDQLDRGIPALLRTPELYVWVLLAIAATAWEQSAFR HHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHC AGPLTASLPAVTVAEPVIGSVLGVTVLGETLRTNGIGLVALGISVAVMAAATVALARSQA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH ASAPTADETPPFSTEKT CCCCCCCCCCCCCCCCC >Mature Secondary Structure SLGAKTRVAGVDTHGRELVGRTDIATVLAVAAALMVGAGDVAQQQSAQQVTDQPVGTVA CCCCCCEEECCCCCCHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHH LFRRLLRDRRWWTGSLVAAGGFGFQAAALGFGSVVLVQALLVTSLLFALLISARVNHRRI HHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH TGRQAVWALLLAAAVAVVVTVGDPQEGTPRGSLQTWTIVALVMGPALVGCVLGARLYPGP HHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH VAALLLGLMSGSLWGLFAVLTKGVVDQLDRGIPALLRTPELYVWVLLAIAATAWEQSAFR HHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHC AGPLTASLPAVTVAEPVIGSVLGVTVLGETLRTNGIGLVALGISVAVMAAATVALARSQA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH ASAPTADETPPFSTEKT CCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8117072; 12948626 [H]