| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is pksS [H]
Identifier: 41408128
GI number: 41408128
Start: 2236277
End: 2237545
Strand: Direct
Name: pksS [H]
Synonym: MAP2030
Alternate gene names: 41408128
Gene position: 2236277-2237545 (Clockwise)
Preceding gene: 41408124
Following gene: 41408131
Centisome position: 46.3
GC content: 64.85
Gene sequence:
>1269_bases ATGGCCACACGTCCGAACGTCAGCCCCGACGCGATCGTCGACTTCGACCATCACTCCGACGCGTTCAACCTCAACGAACT GGCCGTCAACGCCGAACTGCGGCAACGATGTCCGGTCGCGTGGAACGAGAACTACGGCGGGTTCTGGTTCCTCAGCAGCT ACGACGCCGTCAGCCAAACCGCCCGCGACGGCGACACTTTCGCCCACAAGTACGAGCCGAACGCCGCAGACGGCGTGGAC TACCAGGGCGAGATGGGCGTCCCGCGACCCGAAGGCCAACCGGCCCTGGGCCTCGGCGAGGTCGACGGCCCCTACCACCA AGCGCTACGCCACGCGCTGGCCCCGTTCTTCTCCCCCGGCGCCGTCGAGAAACTCAAGCCGTTCATGGAGCATTCCGCCC ACTGGTTCCTCGACCAACAGATAACCACCGGGCAGATGGACCTAGTGCTCGACTACGCCAGCCCCGTCCCGGCCATCCTC ACCATGAAGCTGATGGGTCTGCCATACGACAATTGGCACCTGTACGCCAACCTGTTTCACTCGGTCATGGCGGTCTCCCA GGACAGCGACGAGTACGCCGCCGCGATCGCCAAAGTGCCGGCGATGATGCAAGAAGTCCTCGACTACGCCGCCACCCGAC GCGCGAAACCGGAAGAAGACCTAACCAGCTTCCTCATTCGATTCGAGTTCGACGGCCACCGCCTCACCGACGAGCAGCTG CTCAACATCCTGTGGAACCTGATCGGCGGCGGCGTCGACACCACCACCTCGCAGACCGCGCTGACCCTGCTGCACCTGGG CACCCACCCCGACCTCCGGCAGCAACTCATCGACCACCCCGAGCTCTACCGCACCGCCACCGACGAATTCCTGCGCTACT TCTCGGTCAACCAAACCCTCAGTCGCACAGTCACTCACGACGTTGTCCTGGCCGGCCAACGGCTGCGCAAGAACGACCGC GTCGTCATCAGCTGGCTGTCGGCCAACCACGACGAAAACGAATTCCACCGGCCCGACGAGATCATCCTCGACCGCGCACC CAACCGGCACGTCGCCTTCGGCCTGGGTCCGCACCGCTGCATCGGCTCCCACCTGGCGCGGCTGATGTCGGAGGTCATGG TCAGGGCGGTTCTTGTCCGCATCCCGGACTACCAGGTCGACGTCGACAACGTGCACCAGTACCTGGGCAACCCCAGCATG ACGGGCCTGGGCCAGCTGCCGGTCACCTTCGCACCCGGAAGGAGCCGAAAAGCATTGCGGCCGTGGTGA
Upstream 100 bases:
>100_bases CTACTGCAACCAGCTGGAACGCGTAATAATGCAAACGATAAACCAATAGCCGCCCGCTTCCGCCGAATACGCAAATCACC TTCCGTTGGAGGGCTTTTCG
Downstream 100 bases:
>100_bases TCCCGTGCCATTACACGCAACGGTCCCATTGGCCGCTTCGACAGGAGTGCCATCACATCCGCTAGCAGATTTGGGAGTGA TCTCATGGTAGGCAAACCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 422; Mature: 421
Protein sequence:
>422_residues MATRPNVSPDAIVDFDHHSDAFNLNELAVNAELRQRCPVAWNENYGGFWFLSSYDAVSQTARDGDTFAHKYEPNAADGVD YQGEMGVPRPEGQPALGLGEVDGPYHQALRHALAPFFSPGAVEKLKPFMEHSAHWFLDQQITTGQMDLVLDYASPVPAIL TMKLMGLPYDNWHLYANLFHSVMAVSQDSDEYAAAIAKVPAMMQEVLDYAATRRAKPEEDLTSFLIRFEFDGHRLTDEQL LNILWNLIGGGVDTTTSQTALTLLHLGTHPDLRQQLIDHPELYRTATDEFLRYFSVNQTLSRTVTHDVVLAGQRLRKNDR VVISWLSANHDENEFHRPDEIILDRAPNRHVAFGLGPHRCIGSHLARLMSEVMVRAVLVRIPDYQVDVDNVHQYLGNPSM TGLGQLPVTFAPGRSRKALRPW
Sequences:
>Translated_422_residues MATRPNVSPDAIVDFDHHSDAFNLNELAVNAELRQRCPVAWNENYGGFWFLSSYDAVSQTARDGDTFAHKYEPNAADGVD YQGEMGVPRPEGQPALGLGEVDGPYHQALRHALAPFFSPGAVEKLKPFMEHSAHWFLDQQITTGQMDLVLDYASPVPAIL TMKLMGLPYDNWHLYANLFHSVMAVSQDSDEYAAAIAKVPAMMQEVLDYAATRRAKPEEDLTSFLIRFEFDGHRLTDEQL LNILWNLIGGGVDTTTSQTALTLLHLGTHPDLRQQLIDHPELYRTATDEFLRYFSVNQTLSRTVTHDVVLAGQRLRKNDR VVISWLSANHDENEFHRPDEIILDRAPNRHVAFGLGPHRCIGSHLARLMSEVMVRAVLVRIPDYQVDVDNVHQYLGNPSM TGLGQLPVTFAPGRSRKALRPW >Mature_421_residues ATRPNVSPDAIVDFDHHSDAFNLNELAVNAELRQRCPVAWNENYGGFWFLSSYDAVSQTARDGDTFAHKYEPNAADGVDY QGEMGVPRPEGQPALGLGEVDGPYHQALRHALAPFFSPGAVEKLKPFMEHSAHWFLDQQITTGQMDLVLDYASPVPAILT MKLMGLPYDNWHLYANLFHSVMAVSQDSDEYAAAIAKVPAMMQEVLDYAATRRAKPEEDLTSFLIRFEFDGHRLTDEQLL NILWNLIGGGVDTTTSQTALTLLHLGTHPDLRQQLIDHPELYRTATDEFLRYFSVNQTLSRTVTHDVVLAGQRLRKNDRV VISWLSANHDENEFHRPDEIILDRAPNRHVAFGLGPHRCIGSHLARLMSEVMVRAVLVRIPDYQVDVDNVHQYLGNPSMT GLGQLPVTFAPGRSRKALRPW
Specific function: Involved in the metabolism of the antibiotic polyketide bacillaene which is involved in secondary metabolism. The substrate is dihydrobacillaene [H]
COG id: COG2124
COG function: function code Q; Cytochrome P450
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytochrome P450 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001128 - InterPro: IPR002397 - InterPro: IPR017972 [H]
Pfam domain/function: PF00067 p450 [H]
EC number: NA
Molecular weight: Translated: 47487; Mature: 47356
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: PS00086 CYTOCHROME_P450
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATRPNVSPDAIVDFDHHSDAFNLNELAVNAELRQRCPVAWNENYGGFWFLSSYDAVSQT CCCCCCCCCCCEEECCCCCCCCCHHHHEECHHHHHCCCCCCCCCCCCEEEEECCHHHHHH ARDGDTFAHKYEPNAADGVDYQGEMGVPRPEGQPALGLGEVDGPYHQALRHALAPFFSPG HCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC AVEKLKPFMEHSAHWFLDQQITTGQMDLVLDYASPVPAILTMKLMGLPYDNWHLYANLFH HHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHH SVMAVSQDSDEYAAAIAKVPAMMQEVLDYAATRRAKPEEDLTSFLIRFEFDGHRLTDEQL HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCCHHHH LNILWNLIGGGVDTTTSQTALTLLHLGTHPDLRQQLIDHPELYRTATDEFLRYFSVNQTL HHHHHHHHCCCCCCCCHHHHEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH SRTVTHDVVLAGQRLRKNDRVVISWLSANHDENEFHRPDEIILDRAPNRHVAFGLGPHRC HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCEEEECCCHHHH IGSHLARLMSEVMVRAVLVRIPDYQVDVDNVHQYLGNPSMTGLGQLPVTFAPGRSRKALR HHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCC PW CC >Mature Secondary Structure ATRPNVSPDAIVDFDHHSDAFNLNELAVNAELRQRCPVAWNENYGGFWFLSSYDAVSQT CCCCCCCCCCEEECCCCCCCCCHHHHEECHHHHHCCCCCCCCCCCCEEEEECCHHHHHH ARDGDTFAHKYEPNAADGVDYQGEMGVPRPEGQPALGLGEVDGPYHQALRHALAPFFSPG HCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC AVEKLKPFMEHSAHWFLDQQITTGQMDLVLDYASPVPAILTMKLMGLPYDNWHLYANLFH HHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHH SVMAVSQDSDEYAAAIAKVPAMMQEVLDYAATRRAKPEEDLTSFLIRFEFDGHRLTDEQL HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCCHHHH LNILWNLIGGGVDTTTSQTALTLLHLGTHPDLRQQLIDHPELYRTATDEFLRYFSVNQTL HHHHHHHHCCCCCCCCHHHHEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH SRTVTHDVVLAGQRLRKNDRVVISWLSANHDENEFHRPDEIILDRAPNRHVAFGLGPHRC HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCEEEECCCHHHH IGSHLARLMSEVMVRAVLVRIPDYQVDVDNVHQYLGNPSMTGLGQLPVTFAPGRSRKALR HHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCC PW CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]