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The map label for this gene is 41407639

Identifier: 41407639

GI number: 41407639

Start: 1691031

End: 1691783

Strand: Direct

Name: 41407639

Synonym: MAP1541

Alternate gene names: NA

Gene position: 1691031-1691783 (Clockwise)

Preceding gene: 41407638

Following gene: 41407640

Centisome position: 35.01

GC content: 69.46

Gene sequence:

>753_bases
GTGAGCGCACCCGATAGCTCGGCGCTGGCCGGGATGTCGATCGGGGCGGTCCTGGAATTGTTGAGGCCGGACTTCCCCGA
TGTCACCATCTCCAAGATTCGCTTCTTGGAGGCCGAAGGGCTGGTGACGCCGCAACGGGCCGCGTCGGGGTATCGAAGGT
TCACCGCGTACGACTGCGCGCGGTTGCGTTTCATCCTTACGGCGCAGCGCGATCACTACCTGCCGCTCAAGGTCATCCGG
GCGCAGCTGGACGCCCAACCCGACGGCGAGCTGCCCGCTTTCAACACCCCCTACACTGCCCCCCGGCTGGTGTCGGTGGC
CGGAACCGACGCCGGCGCCAACGCGGGCCTCGGCTCGGACACCTCGGCGGTGGCCCCGGCCCACGTCCGGCTCAGCCGCG
AAGAGCTGCTGCGGCGCGCGGGCGTCGACGACGAACTGCTGACGGCGTTGCTCAAGGCCGGGATCATCACCGCCGGGCCC
GCCGGGTTCTTCGACGAGCACGCCGTCGTCATCCTGCAGTGCTCGCGGGCGCTGTCGGACTACGGCGTCGAGCCGCGGCA
TCTGCGCGCGTTCCGCTCGGCAGCCGACCGGCAGTCGGACCTGATCGCCCAAATCGCCGGGCCGGTAGGCAAAGCCGGCA
AGGCGGGCGCCCGCGATCGCGCCGACGACTTGGCGCGTGAGGTTGCGGCGCTGGCCATTACGTTGCACACGTCGTTGATC
AAATCCGCCGTTCGCGACGTTCTCGATCGCTGA

Upstream 100 bases:

>100_bases
CCGCGGTGCTGGCCAACGGCGACGAAGTGCAGATCGGCAAGTTCCGCTTGGTGTTTTTGACCGGGCCCAAGCAGGGTGAG
GACGGAGGATCTTCAGGCTA

Downstream 100 bases:

>100_bases
GGACTAGACTTCGGTCGACAGCTTGGTTTCGGCAGTGGGGCGGATTTTTGACCTCGCCGTCGCTGGCGAGTACCAATTCA
ACCGGCGCCACTAATGCGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSAPDSSALAGMSIGAVLELLRPDFPDVTISKIRFLEAEGLVTPQRAASGYRRFTAYDCARLRFILTAQRDHYLPLKVIR
AQLDAQPDGELPAFNTPYTAPRLVSVAGTDAGANAGLGSDTSAVAPAHVRLSREELLRRAGVDDELLTALLKAGIITAGP
AGFFDEHAVVILQCSRALSDYGVEPRHLRAFRSAADRQSDLIAQIAGPVGKAGKAGARDRADDLAREVAALAITLHTSLI
KSAVRDVLDR

Sequences:

>Translated_250_residues
MSAPDSSALAGMSIGAVLELLRPDFPDVTISKIRFLEAEGLVTPQRAASGYRRFTAYDCARLRFILTAQRDHYLPLKVIR
AQLDAQPDGELPAFNTPYTAPRLVSVAGTDAGANAGLGSDTSAVAPAHVRLSREELLRRAGVDDELLTALLKAGIITAGP
AGFFDEHAVVILQCSRALSDYGVEPRHLRAFRSAADRQSDLIAQIAGPVGKAGKAGARDRADDLAREVAALAITLHTSLI
KSAVRDVLDR
>Mature_249_residues
SAPDSSALAGMSIGAVLELLRPDFPDVTISKIRFLEAEGLVTPQRAASGYRRFTAYDCARLRFILTAQRDHYLPLKVIRA
QLDAQPDGELPAFNTPYTAPRLVSVAGTDAGANAGLGSDTSAVAPAHVRLSREELLRRAGVDDELLTALLKAGIITAGPA
GFFDEHAVVILQCSRALSDYGVEPRHLRAFRSAADRQSDLIAQIAGPVGKAGKAGARDRADDLAREVAALAITLHTSLIK
SAVRDVLDR

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 26622; Mature: 26490

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPDSSALAGMSIGAVLELLRPDFPDVTISKIRFLEAEGLVTPQRAASGYRRFTAYDCA
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RLRFILTAQRDHYLPLKVIRAQLDAQPDGELPAFNTPYTAPRLVSVAGTDAGANAGLGSD
HHHHEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
TSAVAPAHVRLSREELLRRAGVDDELLTALLKAGIITAGPAGFFDEHAVVILQCSRALSD
CCCCCHHHHHCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
YGVEPRHLRAFRSAADRQSDLIAQIAGPVGKAGKAGARDRADDLAREVAALAITLHTSLI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KSAVRDVLDR
HHHHHHHHCC
>Mature Secondary Structure 
SAPDSSALAGMSIGAVLELLRPDFPDVTISKIRFLEAEGLVTPQRAASGYRRFTAYDCA
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RLRFILTAQRDHYLPLKVIRAQLDAQPDGELPAFNTPYTAPRLVSVAGTDAGANAGLGSD
HHHHEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
TSAVAPAHVRLSREELLRRAGVDDELLTALLKAGIITAGPAGFFDEHAVVILQCSRALSD
CCCCCHHHHHCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
YGVEPRHLRAFRSAADRQSDLIAQIAGPVGKAGKAGARDRADDLAREVAALAITLHTSLI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KSAVRDVLDR
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]