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The map label for this gene is ybjK [C]

Identifier: 41406433

GI number: 41406433

Start: 358545

End: 359120

Strand: Direct

Name: ybjK [C]

Synonym: MAP0335

Alternate gene names: 41406433

Gene position: 358545-359120 (Clockwise)

Preceding gene: 41406432

Following gene: 41406435

Centisome position: 7.42

GC content: 68.75

Gene sequence:

>576_bases
ATGACCCGACGGCCCCACCCGGGCGACTCCACCACCCGTGACCTGCTCATCGACGCGACCATCAAGGTGATGGTCGAGGA
CGGGTACGCCGCGGCGACCTCGCGCCGGGTGGCCGGCGAGGCCGGGGTGAAACCGGCGCTGGTGCACTACTACTTCCCCA
CCATGGACGAGCTGTATCTGGACGTCTTCCGGCGCGGCGCGGCCGCCTACCAGGAACGCCAGACCCGGGCGTTGACCTCC
GAGCGCCCGCTGCACGCCCTCTGGGACACCCTGATCGAGCCGAAGGACACCCGGCTGCTGCTGGAGTTCATGGGACTCGC
CAACCACCGCAAGGCGATTCGCGCCGAGTTGGCGGCCTGGTTCGGGCGCTGGCGCGATACCCAGATCACCGCGCTGAACT
CCATTGTCCGCGAACACGACATGGACGCCGGCGAATTTCCGCCGGCCGGCATCGCGGTCATCCTGGCCGCGATCGGGCGC
ATGCTGATCCTCGAAGATGCCCTCGGCGCCACCGCCGGACACGACGAGGCCGTCGCACTGGTCAACCGGTTCATCGACCG
GTTCGAGTTGCCCTGA

Upstream 100 bases:

>100_bases
CGGCATCGGACGACTCGCCGAGCGAACGGGAACTCGGCATCACCTATCGGGATCCCCGGCAGACCCTGGCGGACACCTTC
GCGGCCCTTTCCGCCACCTC

Downstream 100 bases:

>100_bases
CGGTTCAGGGCACCACGATCCGCAGCCGCTCCCAGCCCCGCACGGTCGACGTCGACGCCAATTGCGCTGTGTCGTAATCG
ATGTCCCATTCGGGCCATCG

Product: hypothetical protein

Products: NA

Alternate protein names: Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; Regulatory Protein; Transcriptional Regulator

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MTRRPHPGDSTTRDLLIDATIKVMVEDGYAAATSRRVAGEAGVKPALVHYYFPTMDELYLDVFRRGAAAYQERQTRALTS
ERPLHALWDTLIEPKDTRLLLEFMGLANHRKAIRAELAAWFGRWRDTQITALNSIVREHDMDAGEFPPAGIAVILAAIGR
MLILEDALGATAGHDEAVALVNRFIDRFELP

Sequences:

>Translated_191_residues
MTRRPHPGDSTTRDLLIDATIKVMVEDGYAAATSRRVAGEAGVKPALVHYYFPTMDELYLDVFRRGAAAYQERQTRALTS
ERPLHALWDTLIEPKDTRLLLEFMGLANHRKAIRAELAAWFGRWRDTQITALNSIVREHDMDAGEFPPAGIAVILAAIGR
MLILEDALGATAGHDEAVALVNRFIDRFELP
>Mature_190_residues
TRRPHPGDSTTRDLLIDATIKVMVEDGYAAATSRRVAGEAGVKPALVHYYFPTMDELYLDVFRRGAAAYQERQTRALTSE
RPLHALWDTLIEPKDTRLLLEFMGLANHRKAIRAELAAWFGRWRDTQITALNSIVREHDMDAGEFPPAGIAVILAAIGRM
LILEDALGATAGHDEAVALVNRFIDRFELP

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21354; Mature: 21223

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRPHPGDSTTRDLLIDATIKVMVEDGYAAATSRRVAGEAGVKPALVHYYFPTMDELYL
CCCCCCCCCCCHHHHHHHHHEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHH
DVFRRGAAAYQERQTRALTSERPLHALWDTLIEPKDTRLLLEFMGLANHRKAIRAELAAW
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FGRWRDTQITALNSIVREHDMDAGEFPPAGIAVILAAIGRMLILEDALGATAGHDEAVAL
HHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VNRFIDRFELP
HHHHHHHHCCC
>Mature Secondary Structure 
TRRPHPGDSTTRDLLIDATIKVMVEDGYAAATSRRVAGEAGVKPALVHYYFPTMDELYL
CCCCCCCCCCHHHHHHHHHEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHH
DVFRRGAAAYQERQTRALTSERPLHALWDTLIEPKDTRLLLEFMGLANHRKAIRAELAAW
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FGRWRDTQITALNSIVREHDMDAGEFPPAGIAVILAAIGRMLILEDALGATAGHDEAVAL
HHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VNRFIDRFELP
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA