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The map label for this gene is 41406379

Identifier: 41406379

GI number: 41406379

Start: 298301

End: 298774

Strand: Direct

Name: 41406379

Synonym: MAP0281

Alternate gene names: NA

Gene position: 298301-298774 (Clockwise)

Preceding gene: 41406378

Following gene: 41406384

Centisome position: 6.18

GC content: 65.61

Gene sequence:

>474_bases
ATGACACGGAAAGCCGAGATCGTCGCTGTCTTCGCGATCTGTACTGCCTTCATGACCGCTTCCGGCGCATTCGGCGGCTT
CGCCGCCCGCGCGGACGACCCGGAGATCCTGTACAACGGCATCAACCAGCTTCGCCAGGCGTGCGGACCGATCGCCGAGG
ACCCACGTTTGACGGAAGCCGCGCAGCAGCACGCCGACGACATGCTGCGCAACGGGGTGAGCGGACACATCGGTTCCGAC
GGCTCGTCGCCGCAGGCGCGCATCGCCGCCGCGGGCTATCGCAGCAGGTACTCGGGTGAGATCGTCTTCTGGGCAACCGG
TTCCGCCGCGACTCCCAGCGAAGCCCTCGACATGTGGATGCAGAGTCCCCCGCACCGGGCGATCATCCTGAACTGCGGAT
TCAATGCCGGTGGCTTCGCCACCGCCCGGGACGGCAACAAGATGACCGCCGTCGGTGATTTCGCAACTTCGTAA

Upstream 100 bases:

>100_bases
GCCACTAGGACCGCTCGGCCGATCTCGACCCCTGATGGTCGCGAACGGGTAACATTTCGTTATCTAAAACAGATAAACGA
GCATGCGGGCACGAGGCGCC

Downstream 100 bases:

>100_bases
AACCTAACGGCGCCATTCCTTTTGGGCAGTCACACGTGGGGCAGCCATTTTGAGCCGTGTGGTGAGAGTATGAAGGCTCG
GTCTTGGGCGTCTTTGCATG

Product: hypothetical protein

Products: NA

Alternate protein names: Allergen V5/Tpx-1 Family Protein; RNA Polymerase ECF-Subfamily Sigma Factor; Lipoprotein; Allergen V5/Tpx-1 Protein; Transmembrane Protein

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTRKAEIVAVFAICTAFMTASGAFGGFAARADDPEILYNGINQLRQACGPIAEDPRLTEAAQQHADDMLRNGVSGHIGSD
GSSPQARIAAAGYRSRYSGEIVFWATGSAATPSEALDMWMQSPPHRAIILNCGFNAGGFATARDGNKMTAVGDFATS

Sequences:

>Translated_157_residues
MTRKAEIVAVFAICTAFMTASGAFGGFAARADDPEILYNGINQLRQACGPIAEDPRLTEAAQQHADDMLRNGVSGHIGSD
GSSPQARIAAAGYRSRYSGEIVFWATGSAATPSEALDMWMQSPPHRAIILNCGFNAGGFATARDGNKMTAVGDFATS
>Mature_156_residues
TRKAEIVAVFAICTAFMTASGAFGGFAARADDPEILYNGINQLRQACGPIAEDPRLTEAAQQHADDMLRNGVSGHIGSDG
SSPQARIAAAGYRSRYSGEIVFWATGSAATPSEALDMWMQSPPHRAIILNCGFNAGGFATARDGNKMTAVGDFATS

Specific function: Unknown

COG id: COG2340

COG function: function code S; Uncharacterized protein with SCP/PR1 domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16462; Mature: 16330

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRKAEIVAVFAICTAFMTASGAFGGFAARADDPEILYNGINQLRQACGPIAEDPRLTEA
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH
AQQHADDMLRNGVSGHIGSDGSSPQARIAAAGYRSRYSGEIVFWATGSAATPSEALDMWM
HHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHCCCCCCCCCEEEEECCCCCCHHHHHHHHH
QSPPHRAIILNCGFNAGGFATARDGNKMTAVGDFATS
CCCCCCEEEEECCCCCCCCEEECCCCEEEEECCCCCC
>Mature Secondary Structure 
TRKAEIVAVFAICTAFMTASGAFGGFAARADDPEILYNGINQLRQACGPIAEDPRLTEA
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH
AQQHADDMLRNGVSGHIGSDGSSPQARIAAAGYRSRYSGEIVFWATGSAATPSEALDMWM
HHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHCCCCCCCCCEEEEECCCCCCHHHHHHHHH
QSPPHRAIILNCGFNAGGFATARDGNKMTAVGDFATS
CCCCCCEEEEECCCCCCCCEEECCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA