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The map label for this gene is sigI

Identifier: 41406268

GI number: 41406268

Start: 173736

End: 174593

Strand: Direct

Name: sigI

Synonym: MAP0170

Alternate gene names: NA

Gene position: 173736-174593 (Clockwise)

Preceding gene: 41406265

Following gene: 41406270

Centisome position: 3.6

GC content: 73.08

Gene sequence:

>858_bases
ATGAACCGGTCGCCGTCAGCCGACGACCAGGTCGCCGAGGCCTGGCGTCGTCACCGCCCCTACCTGGTCAACCTCGCCTA
CCAGATGCTGGGCGACATCGGCGACGCCGAAGACGTTGCGCAGGAGGCATTCCTGCGGCTGTCCGCCGCGGGCGACATCG
ACGACGTGCGGGGCTGGCTGACCGTGGTGGCCAGCCGGCTCTGCCTGGACCAGCTGCGCTCGGCCCGCGCGCGACACGAA
CGTCCGGGCGATGTCGGCGAGCAGCCGGCCCCGCCGCGGTTCGACCCGGCCGACCGGATCACCCTCGACGACGAGGTCCG
CACCGCGCTGCTGGAGGTGCTGCGCAGGCTCAGCCCGGGGGAGCGGGTCAGCTTCGTGCTGCACGACGTGTTCGGGGTGC
CCTTCGAGGCCATCGCGCAGACCGTGGGCCGCCCGGTTGGCACCTGCCGCCAGCTGGCCCGGCGCGCCCGGGCGAAATTC
GTTGCCGCGCAACCGAAGCTGAACACCGTGGGCGCGGCCGAGCATCAGCTGGTCACCGAGAAGTTCATCACCGCATGCGC
CAATGGGGACCTGGCCGGGTTGGCCGCCGTGCTGGATCCGACGGTCTGGGGTGTGGGCACCGTCCTCGCCGACCCGGCCC
CGCCGCCGCAGGTCAACCACGGCCCGGATGCGGTGGCCACCAACCTGCTTCGCTACCTGTGGCCGGACGTCACCCTGGTC
GGCGGGCCGGCCGGGGCGCCGGTGCTGCTGGCGTTCAGCCGACGCCGGCTGTTCGCCGTCATCGTGCTCAGCATCCGCGA
CGCGCGGGTGGTCAAGATCGAGGCGATCGCCGACCCGGCGGCCCGCAGCGCCGGCTAG

Upstream 100 bases:

>100_bases
TCCAGGTGTTTCGTCCACTGCTGCAAGGACGGGGCCGAAGGTGGGAAAGTTACACCGGGAGAACGGGTAACTTTTTGCGG
CAGCAGATCGTCGAAGAGTC

Downstream 100 bases:

>100_bases
TGTTCCGGCGGGCGCCGGTCGGCGGAACGGTCGGGGCGGCGGGCGAAGTAGCCGGCGATCGTCGCCGTCACCTCGAGGAA
CTTGCGCCGGGTGGCCGGGG

Product: RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor; ECF-Sigma Factor; Sigma-; ECF-Family RNA Polymerase Sigma Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase Sigma Factor SigI; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; AlteRNAtive RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase; Sigma-70 Region 2 Domain-Containing Protein; Sigma Factor Sigma; AlteRNAtive RNA Polymerase Sigma Factor SigJ; Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; RNA Polymerase ECF-Type Sigma Factor SigJ; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; AlteRNAtive RNA Polymerase Sigma Factor SigJ-Like Protein; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-70 Factor Protein; RNA Polymerase; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MNRSPSADDQVAEAWRRHRPYLVNLAYQMLGDIGDAEDVAQEAFLRLSAAGDIDDVRGWLTVVASRLCLDQLRSARARHE
RPGDVGEQPAPPRFDPADRITLDDEVRTALLEVLRRLSPGERVSFVLHDVFGVPFEAIAQTVGRPVGTCRQLARRARAKF
VAAQPKLNTVGAAEHQLVTEKFITACANGDLAGLAAVLDPTVWGVGTVLADPAPPPQVNHGPDAVATNLLRYLWPDVTLV
GGPAGAPVLLAFSRRRLFAVIVLSIRDARVVKIEAIADPAARSAG

Sequences:

>Translated_285_residues
MNRSPSADDQVAEAWRRHRPYLVNLAYQMLGDIGDAEDVAQEAFLRLSAAGDIDDVRGWLTVVASRLCLDQLRSARARHE
RPGDVGEQPAPPRFDPADRITLDDEVRTALLEVLRRLSPGERVSFVLHDVFGVPFEAIAQTVGRPVGTCRQLARRARAKF
VAAQPKLNTVGAAEHQLVTEKFITACANGDLAGLAAVLDPTVWGVGTVLADPAPPPQVNHGPDAVATNLLRYLWPDVTLV
GGPAGAPVLLAFSRRRLFAVIVLSIRDARVVKIEAIADPAARSAG
>Mature_285_residues
MNRSPSADDQVAEAWRRHRPYLVNLAYQMLGDIGDAEDVAQEAFLRLSAAGDIDDVRGWLTVVASRLCLDQLRSARARHE
RPGDVGEQPAPPRFDPADRITLDDEVRTALLEVLRRLSPGERVSFVLHDVFGVPFEAIAQTVGRPVGTCRQLARRARAKF
VAAQPKLNTVGAAEHQLVTEKFITACANGDLAGLAAVLDPTVWGVGTVLADPAPPPQVNHGPDAVATNLLRYLWPDVTLV
GGPAGAPVLLAFSRRRLFAVIVLSIRDARVVKIEAIADPAARSAG

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30731; Mature: 30731

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSPSADDQVAEAWRRHRPYLVNLAYQMLGDIGDAEDVAQEAFLRLSAAGDIDDVRGWL
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
TVVASRLCLDQLRSARARHERPGDVGEQPAPPRFDPADRITLDDEVRTALLEVLRRLSPG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
ERVSFVLHDVFGVPFEAIAQTVGRPVGTCRQLARRARAKFVAAQPKLNTVGAAEHQLVTE
HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
KFITACANGDLAGLAAVLDPTVWGVGTVLADPAPPPQVNHGPDAVATNLLRYLWPDVTLV
HHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
GGPAGAPVLLAFSRRRLFAVIVLSIRDARVVKIEAIADPAARSAG
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHCCCC
>Mature Secondary Structure
MNRSPSADDQVAEAWRRHRPYLVNLAYQMLGDIGDAEDVAQEAFLRLSAAGDIDDVRGWL
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
TVVASRLCLDQLRSARARHERPGDVGEQPAPPRFDPADRITLDDEVRTALLEVLRRLSPG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
ERVSFVLHDVFGVPFEAIAQTVGRPVGTCRQLARRARAKFVAAQPKLNTVGAAEHQLVTE
HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
KFITACANGDLAGLAAVLDPTVWGVGTVLADPAPPPQVNHGPDAVATNLLRYLWPDVTLV
HHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
GGPAGAPVLLAFSRRRLFAVIVLSIRDARVVKIEAIADPAARSAG
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA