| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41406206
Identifier: 41406206
GI number: 41406206
Start: 117766
End: 119289
Strand: Direct
Name: 41406206
Synonym: MAP0108
Alternate gene names: NA
Gene position: 117766-119289 (Clockwise)
Preceding gene: 41406205
Following gene: 41406207
Centisome position: 2.44
GC content: 70.28
Gene sequence:
>1524_bases CTGCTGGCCCTGGGGGCGACGGTGCTGCTGATCGCCGGGCTGATCACCGGCGGCCTGCTGCTGAAGTCCACCGGGCGGCT CAACGACTACGTCCGCGTGGTCGCCGAGCTGACCAATGTGGGTGACGGGCTGCCGGCCCGGTCCGACGTCAAGTATCACG GGCTGCTCGTCGGCGCGGTCGACAACGTCATTCCCGCGGCCTACGGCAAGCCCAACTACGTGCACATCAACCTCAAACCC GAATACGCCCAGGACATTCCGAGCGCGGTGACGGCGCGCGTGGTGCCCAGCAACGTGTTCGCGGTGTCGTCGGTGCAACT CGTCGACGGCGCGCCGGGCCCCAGCATCCGCAACGGTGCGCGCATCCCCGAAGACCTGCAGCTGTCGACGGTGATCTTCC AGACCACCATCAGCAAGCTGCGTGACATCCTGGCCGCCACCGGGCGGGGCCGCGAAGACCACACCGTCGGCATCCTGGCT GCCGTCGCCGCGGCCACCAACAACCGGCGCGGCCCGCTGCTCACCGCCGGTGCACAGTTGACCCGGGTGCTCGACGAGCT CAACGCCATCGTCGCCACCGACCCCGGGCCGTCCACGGTCTCGGCGCTGCTGGACGCCACCCGCGGGTTGCAGTCCACCG CGCCGGACCTGGTCGACGTCCTGCACGACGCGGTCAGACCGATGCAGACCCTGGTCGAGAAGCGCGAGCAGTTCCGGTCG CTGGTCACCGGCTCCTACCACACCTTCAGCGTCAACCGGCAGGCCTTCGACAACCACACCGACCAGCTGATCGAGATGAC GCAGAACCTCACCCCGGTCCTCGGCTTCTTCGCGATGAACAGCGACAAATTCGTGCCCATCTTCACCAGGCTGAATCGAC TGTCCGACAAGTTCTTTCAAGAGGTATGGGATCCCGAGCTCGACACCGGGAACATGCGCGTCAATCTGGCGTTGACACCC ACCTACACCTACACCCGGGCCGACTGCCCGCGATATGGCCAGCTGCAGGGGCCCAGTTGTTTCACCGCGCCGACGATCGC GGTGCGGCCGGACCTGCCCGAGGTGCTGCTACCGCAGAACTACCACCCACCCACGGATCTGGCGCCGCCGCCGGGCACCC AGATCGGACCCGACGGCAACCTGGTGGCGACCGGCCCTCCGCTGTACAACCCGAATCCCAGCCTGGCCGACCCCAACCCG CCCTTGCCGTGGTGGCCATGGCAGATCGGTCCCGCGCCCCGGGTGCCGGGCACCGCCGACCCCGACGACGCGCCGCCGCC TCCGCCGCCGAGCCCGGCCCCGCCGGGTCCGCCGCCGAGCCCGGCCCCGCCGGGTGCGGTCGCACCAGCGGCGTACGGCG GCAACGTCGGTCCCGTTGGTAGCCAACGCGAACGCGACCAGCTGGGTCTGATCACCGGCCAGGGCCGCCCGGCGTCCGTG GCGACGCAGCTGCTCCTGGGGCCGGTGGCGCGCGGCAGCGCGGTCTCCCTGCAGCCACGGGCGGCGACGGGCGGACCGAC ATGA
Upstream 100 bases:
>100_bases GCTCACCATGGCGTTGTGGAGCATCGACGCGGGCGCGAGATTCGGTGGCTGAATGGCGAATTCGTTAGACTTCGACGGCC GCGGCCCCACCGACCACCAG
Downstream 100 bases:
>100_bases GGGTGCGCGGACCGCTGATCGGCCTGTCGCTGTTCATGGCGATCGCCATCGCCGTGACCTGGATGGTGTATGCCACCCTG CGGCGCGATGTGGCCGGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: Virulence Factor Mce Family Protein; Mce Related Protein; MCE Family Protein; Secreted Protein; Mammalian Cell Entry Related Domain-Containing Protein; MCE-Family A; Mce Protein Mce5A; Mce-Related Protein
Number of amino acids: Translated: 507; Mature: 507
Protein sequence:
>507_residues MLALGATVLLIAGLITGGLLLKSTGRLNDYVRVVAELTNVGDGLPARSDVKYHGLLVGAVDNVIPAAYGKPNYVHINLKP EYAQDIPSAVTARVVPSNVFAVSSVQLVDGAPGPSIRNGARIPEDLQLSTVIFQTTISKLRDILAATGRGREDHTVGILA AVAAATNNRRGPLLTAGAQLTRVLDELNAIVATDPGPSTVSALLDATRGLQSTAPDLVDVLHDAVRPMQTLVEKREQFRS LVTGSYHTFSVNRQAFDNHTDQLIEMTQNLTPVLGFFAMNSDKFVPIFTRLNRLSDKFFQEVWDPELDTGNMRVNLALTP TYTYTRADCPRYGQLQGPSCFTAPTIAVRPDLPEVLLPQNYHPPTDLAPPPGTQIGPDGNLVATGPPLYNPNPSLADPNP PLPWWPWQIGPAPRVPGTADPDDAPPPPPPSPAPPGPPPSPAPPGAVAPAAYGGNVGPVGSQRERDQLGLITGQGRPASV ATQLLLGPVARGSAVSLQPRAATGGPT
Sequences:
>Translated_507_residues MLALGATVLLIAGLITGGLLLKSTGRLNDYVRVVAELTNVGDGLPARSDVKYHGLLVGAVDNVIPAAYGKPNYVHINLKP EYAQDIPSAVTARVVPSNVFAVSSVQLVDGAPGPSIRNGARIPEDLQLSTVIFQTTISKLRDILAATGRGREDHTVGILA AVAAATNNRRGPLLTAGAQLTRVLDELNAIVATDPGPSTVSALLDATRGLQSTAPDLVDVLHDAVRPMQTLVEKREQFRS LVTGSYHTFSVNRQAFDNHTDQLIEMTQNLTPVLGFFAMNSDKFVPIFTRLNRLSDKFFQEVWDPELDTGNMRVNLALTP TYTYTRADCPRYGQLQGPSCFTAPTIAVRPDLPEVLLPQNYHPPTDLAPPPGTQIGPDGNLVATGPPLYNPNPSLADPNP PLPWWPWQIGPAPRVPGTADPDDAPPPPPPSPAPPGPPPSPAPPGAVAPAAYGGNVGPVGSQRERDQLGLITGQGRPASV ATQLLLGPVARGSAVSLQPRAATGGPT >Mature_507_residues MLALGATVLLIAGLITGGLLLKSTGRLNDYVRVVAELTNVGDGLPARSDVKYHGLLVGAVDNVIPAAYGKPNYVHINLKP EYAQDIPSAVTARVVPSNVFAVSSVQLVDGAPGPSIRNGARIPEDLQLSTVIFQTTISKLRDILAATGRGREDHTVGILA AVAAATNNRRGPLLTAGAQLTRVLDELNAIVATDPGPSTVSALLDATRGLQSTAPDLVDVLHDAVRPMQTLVEKREQFRS LVTGSYHTFSVNRQAFDNHTDQLIEMTQNLTPVLGFFAMNSDKFVPIFTRLNRLSDKFFQEVWDPELDTGNMRVNLALTP TYTYTRADCPRYGQLQGPSCFTAPTIAVRPDLPEVLLPQNYHPPTDLAPPPGTQIGPDGNLVATGPPLYNPNPSLADPNP PLPWWPWQIGPAPRVPGTADPDDAPPPPPPSPAPPGPPPSPAPPGAVAPAAYGGNVGPVGSQRERDQLGLITGQGRPASV ATQLLLGPVARGSAVSLQPRAATGGPT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53446; Mature: 53446
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLALGATVLLIAGLITGGLLLKSTGRLNDYVRVVAELTNVGDGLPARSDVKYHGLLVGAV CCCCHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEHEEEEECH DNVIPAAYGKPNYVHINLKPEYAQDIPSAVTARVVPSNVFAVSSVQLVDGAPGPSIRNGA HHHHHHCCCCCCEEEEEECCHHHHHCHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCC RIPEDLQLSTVIFQTTISKLRDILAATGRGREDHTVGILAAVAAATNNRRGPLLTAGAQL CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEECHHHH TRVLDELNAIVATDPGPSTVSALLDATRGLQSTAPDLVDVLHDAVRPMQTLVEKREQFRS HHHHHHHCEEEECCCCHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LVTGSYHTFSVNRQAFDNHTDQLIEMTQNLTPVLGFFAMNSDKFVPIFTRLNRLSDKFFQ HHCCCCEEEECCHHHHHHHHHHHHHHHHCCCHHHHHEEECCCCEEHHHHHHHHHHHHHHH EVWDPELDTGNMRVNLALTPTYTYTRADCPRYGQLQGPSCFTAPTIAVRPDLPEVLLPQN HHCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCHHHCCCC YHPPTDLAPPPGTQIGPDGNLVATGPPLYNPNPSLADPNPPLPWWPWQIGPAPRVPGTAD CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PDDAPPPPPPSPAPPGPPPSPAPPGAVAPAAYGGNVGPVGSQRERDQLGLITGQGRPASV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHH ATQLLLGPVARGSAVSLQPRAATGGPT HHHHHHHHCCCCCEEEECCCCCCCCCC >Mature Secondary Structure MLALGATVLLIAGLITGGLLLKSTGRLNDYVRVVAELTNVGDGLPARSDVKYHGLLVGAV CCCCHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEHEEEEECH DNVIPAAYGKPNYVHINLKPEYAQDIPSAVTARVVPSNVFAVSSVQLVDGAPGPSIRNGA HHHHHHCCCCCCEEEEEECCHHHHHCHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCC RIPEDLQLSTVIFQTTISKLRDILAATGRGREDHTVGILAAVAAATNNRRGPLLTAGAQL CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEECHHHH TRVLDELNAIVATDPGPSTVSALLDATRGLQSTAPDLVDVLHDAVRPMQTLVEKREQFRS HHHHHHHCEEEECCCCHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LVTGSYHTFSVNRQAFDNHTDQLIEMTQNLTPVLGFFAMNSDKFVPIFTRLNRLSDKFFQ HHCCCCEEEECCHHHHHHHHHHHHHHHHCCCHHHHHEEECCCCEEHHHHHHHHHHHHHHH EVWDPELDTGNMRVNLALTPTYTYTRADCPRYGQLQGPSCFTAPTIAVRPDLPEVLLPQN HHCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCHHHCCCC YHPPTDLAPPPGTQIGPDGNLVATGPPLYNPNPSLADPNPPLPWWPWQIGPAPRVPGTAD CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PDDAPPPPPPSPAPPGPPPSPAPPGAVAPAAYGGNVGPVGSQRERDQLGLITGQGRPASV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHH ATQLLLGPVARGSAVSLQPRAATGGPT HHHHHHHHCCCCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA