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The map label for this gene is ybgC [H]

Identifier: 39998550

GI number: 39998550

Start: 3805904

End: 3806296

Strand: Reverse

Name: ybgC [H]

Synonym: GSU3461

Alternate gene names: 39998550

Gene position: 3806296-3805904 (Counterclockwise)

Preceding gene: 39998551

Following gene: 308513346

Centisome position: 99.79

GC content: 62.6

Gene sequence:

>393_bases
GTGGAATTCCGTATCTACTATGAGGACACCGACGCCGGCGGCGTAGTCTATCATGCGCGCTACCTGGGCTTTTTCGAGCG
GGGACGATGCGAGTTCCTGCGGGAACGCGGACTTTCGGTCCGGGAGCTGGCCGACCGAGGCTGCATTTTTCCGGTCGTGC
GGATGGAGATCGACTTTCGTGCCCCGGCAGTGCTGGACGATCTTGTCCGGGTTGAGACCGAGGTGCTTGAGGTGGGCAAA
ACCTCATTTACCGTGGGACAGCAGGTGGTGCGCTGCCTGGACGGCAAGCTGCTGGTTGGGGGCAAGGTGACCCTCGTCTG
CGTCGGGCCGGGGATGAAGCCCAAACGTCTCCCCGCCGAGCTGATCCAAGCCTTGATGCCGGAGATGCCGTGA

Upstream 100 bases:

>100_bases
CCGGCGTGACCTCCAACGTGGTGTTGAGATTCAAGTAACCGCAGCCCCATCTGCCATTAAAAAGAGGCTCACAGCCTCTT
TTTTTTCGTGAGGAGCCAGA

Downstream 100 bases:

>100_bases
GCGCACCCCGCGTGTCGATTCTCATGCCGGTCCGCAACGAAGAGCGCTTCCTGCCCGCTGCCCTGGCCTCCCTGTGCCGG
CAGTCCCTGACGGCATGGGA

Product: thioesterase

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MEFRIYYEDTDAGGVVYHARYLGFFERGRCEFLRERGLSVRELADRGCIFPVVRMEIDFRAPAVLDDLVRVETEVLEVGK
TSFTVGQQVVRCLDGKLLVGGKVTLVCVGPGMKPKRLPAELIQALMPEMP

Sequences:

>Translated_130_residues
MEFRIYYEDTDAGGVVYHARYLGFFERGRCEFLRERGLSVRELADRGCIFPVVRMEIDFRAPAVLDDLVRVETEVLEVGK
TSFTVGQQVVRCLDGKLLVGGKVTLVCVGPGMKPKRLPAELIQALMPEMP
>Mature_130_residues
MEFRIYYEDTDAGGVVYHARYLGFFERGRCEFLRERGLSVRELADRGCIFPVVRMEIDFRAPAVLDDLVRVETEVLEVGK
TSFTVGQQVVRCLDGKLLVGGKVTLVCVGPGMKPKRLPAELIQALMPEMP

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=120, Percent_Identity=43.3333333333333, Blast_Score=107, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 14638; Mature: 14638

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS01328 4HBCOA_THIOESTERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFRIYYEDTDAGGVVYHARYLGFFERGRCEFLRERGLSVRELADRGCIFPVVRMEIDFR
CCEEEEEECCCCCCEEEHHHHHHHHHCCHHHHHHHCCCCHHHHHCCCCEEEEEEEEECCC
APAVLDDLVRVETEVLEVGKTSFTVGQQVVRCLDGKLLVGGKVTLVCVGPGMKPKRLPAE
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCCCHHH
LIQALMPEMP
HHHHHCCCCC
>Mature Secondary Structure
MEFRIYYEDTDAGGVVYHARYLGFFERGRCEFLRERGLSVRELADRGCIFPVVRMEIDFR
CCEEEEEECCCCCCEEEHHHHHHHHHCCHHHHHHHCCCCHHHHHCCCCEEEEEEEEECCC
APAVLDDLVRVETEVLEVGKTSFTVGQQVVRCLDGKLLVGGKVTLVCVGPGMKPKRLPAE
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCCCHHH
LIQALMPEMP
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]