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The map label for this gene is 39998393

Identifier: 39998393

GI number: 39998393

Start: 3627493

End: 3628866

Strand: Direct

Name: 39998393

Synonym: GSU3304

Alternate gene names: NA

Gene position: 3627493-3628866 (Clockwise)

Preceding gene: 39998392

Following gene: 39998394

Centisome position: 95.11

GC content: 58.59

Gene sequence:

>1374_bases
ATGAAAAAGAAGATTTTTGCTGTGGCCGCCGCCGGCGCCCTGACCGCTGCGACGGCAGTTCCGGCCCTGGCGCTGGAGAA
CGAGTTTCACGGGATGTTCCGGGTTAACGGTTTCATCTCCAACTTCGCCGACGGTGCTTCGGGCGCAACCAAAATTACCG
CCCAGGACCCCAAAACCAGAAACTTTCTTGAGCAGCGCGCCCGCCTGCTCTACATGGCCAAGGCCAATGACGATCTCAAG
CTCATTACCCACTTCGAGATCGACTCAACCTGGGGCAAGTCCTCCTACGTAGTCGGAAGATCGAACGATGGCGGCGCTCT
CGGCGCGGACAGCGTCAACATTGAGACCAAAAACGTTTACCTCGACTTCAACATCCCCTCGACCCCGCTGAACGTCAAGG
TCGGTATCCAGCCCATCAGCGACTCGTACAAGGGCGTCTTCATCAATGCCGATGCGGCTGCCGTCCTTGCGGCCGCCAAA
ATGGGCGATGCCACCGTCGCACTCGGGTTCGCACGTCTCGACGATGCCGATACGTTCACCATCGGCTCTGCTGCGAACCG
CTCTGCCACCACCCCGGGCAAAGCTACCCGCGACCTCTACATCGTCGACGGCAAATACAACATCTCCAAAGACCTGAAGG
TCGGCGGCTCCTACTATGCCCTGCTGGCGGACCAGAATGACACAACTCTCAACTTCGCTCTCCACACCATTGGTGTGAAT
GCCGAGTACAAGTTCGATCCCGTGACCATCGACGGCTTCCTGCTCTATCAACGCGGCCGGACCAGCGGCACCGCCAAGGT
CGACTTCGGCGGATGGGCCGCAAACGCCACCGCCAAGATGAAAGTCGGCCCCGGCACCCTGAAAACCTCCTTCCTCTACG
CCTCCGGAGAGCAAAACGCCAATCCGGACAACTCCTCTTACATGGGCGTGACCAACGAGACCTCCGGCGCCAACGGCGAG
CACAGCTTCTATGAGTCCGAGATGATGATCATGTTCCGGAACAAGTACAACATCGGCGACCGCGCTCTTGTGTACAACGT
ACAGAACGTCATCGGCGGATTCGTCGGCTACAATGCGAACATTACCTCCAAGGCATTCGCCATCGCCAACGTAGGCTTTG
TTGCCGCCGACAAAGACAACACCACCTATGGCAATGCGCGCGTAACCGGCGAGGCGGGTCACAAGAGCAAGTACCTCGGT
ACCGAACTCAACGCCGAAGTCGGCTACAAGGTGTTTGACAACCTGACTGCCAGCGTACAGGGCGCCTACGTGATTCTCGG
CGACTACTTCAAGGATACCGCCGGCACGGCGGCAAACCCCGAAGATCCCCGGAATCCGTACCTGACCCGCGTCATGCTGA
ACTACGCATTCTAA

Upstream 100 bases:

>100_bases
ATACTTGATCTGAAAGGTGGTGATCAACGAGGTTTCTCACGCATTCAGGCAGTTTTAGCCAGTAATCCATGCTGTTTTAT
CACCAATGAAGGAGGCAACG

Downstream 100 bases:

>100_bases
TTGCATCACCCCGTGTGCCGGGAGAAGATCGTTCTTCTTCCGGCACACTGCCACTTGACATGGCACCGACACCTGATTAA
CTTGACTTCATCACAAACCC

Product: LamB porin family protein

Products: NA

Alternate protein names: Porin OmpJ; OmpJ-Like Porin

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MKKKIFAVAAAGALTAATAVPALALENEFHGMFRVNGFISNFADGASGATKITAQDPKTRNFLEQRARLLYMAKANDDLK
LITHFEIDSTWGKSSYVVGRSNDGGALGADSVNIETKNVYLDFNIPSTPLNVKVGIQPISDSYKGVFINADAAAVLAAAK
MGDATVALGFARLDDADTFTIGSAANRSATTPGKATRDLYIVDGKYNISKDLKVGGSYYALLADQNDTTLNFALHTIGVN
AEYKFDPVTIDGFLLYQRGRTSGTAKVDFGGWAANATAKMKVGPGTLKTSFLYASGEQNANPDNSSYMGVTNETSGANGE
HSFYESEMMIMFRNKYNIGDRALVYNVQNVIGGFVGYNANITSKAFAIANVGFVAADKDNTTYGNARVTGEAGHKSKYLG
TELNAEVGYKVFDNLTASVQGAYVILGDYFKDTAGTAANPEDPRNPYLTRVMLNYAF

Sequences:

>Translated_457_residues
MKKKIFAVAAAGALTAATAVPALALENEFHGMFRVNGFISNFADGASGATKITAQDPKTRNFLEQRARLLYMAKANDDLK
LITHFEIDSTWGKSSYVVGRSNDGGALGADSVNIETKNVYLDFNIPSTPLNVKVGIQPISDSYKGVFINADAAAVLAAAK
MGDATVALGFARLDDADTFTIGSAANRSATTPGKATRDLYIVDGKYNISKDLKVGGSYYALLADQNDTTLNFALHTIGVN
AEYKFDPVTIDGFLLYQRGRTSGTAKVDFGGWAANATAKMKVGPGTLKTSFLYASGEQNANPDNSSYMGVTNETSGANGE
HSFYESEMMIMFRNKYNIGDRALVYNVQNVIGGFVGYNANITSKAFAIANVGFVAADKDNTTYGNARVTGEAGHKSKYLG
TELNAEVGYKVFDNLTASVQGAYVILGDYFKDTAGTAANPEDPRNPYLTRVMLNYAF
>Mature_457_residues
MKKKIFAVAAAGALTAATAVPALALENEFHGMFRVNGFISNFADGASGATKITAQDPKTRNFLEQRARLLYMAKANDDLK
LITHFEIDSTWGKSSYVVGRSNDGGALGADSVNIETKNVYLDFNIPSTPLNVKVGIQPISDSYKGVFINADAAAVLAAAK
MGDATVALGFARLDDADTFTIGSAANRSATTPGKATRDLYIVDGKYNISKDLKVGGSYYALLADQNDTTLNFALHTIGVN
AEYKFDPVTIDGFLLYQRGRTSGTAKVDFGGWAANATAKMKVGPGTLKTSFLYASGEQNANPDNSSYMGVTNETSGANGE
HSFYESEMMIMFRNKYNIGDRALVYNVQNVIGGFVGYNANITSKAFAIANVGFVAADKDNTTYGNARVTGEAGHKSKYLG
TELNAEVGYKVFDNLTASVQGAYVILGDYFKDTAGTAANPEDPRNPYLTRVMLNYAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48883; Mature: 48883

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKIFAVAAAGALTAATAVPALALENEFHGMFRVNGFISNFADGASGATKITAQDPKTR
CCCEEEEEEECCHHHHHHHHHHEEECCCCCCEEEEECHHHHCCCCCCCCEEEEECCCHHH
NFLEQRARLLYMAKANDDLKLITHFEIDSTWGKSSYVVGRSNDGGALGADSVNIETKNVY
HHHHHHCEEEEEEECCCCEEEEEEEEEECCCCCCEEEEEECCCCCEECCCCEEEEEEEEE
LDFNIPSTPLNVKVGIQPISDSYKGVFINADAAAVLAAAKMGDATVALGFARLDDADTFT
EEECCCCCCEEEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCEEEEEEEEECCCCCEEE
IGSAANRSATTPGKATRDLYIVDGKYNISKDLKVGGSYYALLADQNDTTLNFALHTIGVN
ECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCEEEEEEECCCCCEEEEEEEEEECC
AEYKFDPVTIDGFLLYQRGRTSGTAKVDFGGWAANATAKMKVGPGTLKTSFLYASGEQNA
CEEEECCEEEEEEEEEECCCCCCEEEEECCCEECCCEEEEEECCCCEEEEEEEECCCCCC
NPDNSSYMGVTNETSGANGEHSFYESEMMIMFRNKYNIGDRALVYNVQNVIGGFVGYNAN
CCCCCCEEEEECCCCCCCCCCCEECCEEEEEEECCCCCCCEEEEEEHHHHHHHHHCCCCC
ITSKAFAIANVGFVAADKDNTTYGNARVTGEAGHKSKYLGTELNAEVGYKVFDNLTASVQ
CCCCEEEEEECEEEEECCCCCEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
GAYVILGDYFKDTAGTAANPEDPRNPYLTRVMLNYAF
CEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MKKKIFAVAAAGALTAATAVPALALENEFHGMFRVNGFISNFADGASGATKITAQDPKTR
CCCEEEEEEECCHHHHHHHHHHEEECCCCCCEEEEECHHHHCCCCCCCCEEEEECCCHHH
NFLEQRARLLYMAKANDDLKLITHFEIDSTWGKSSYVVGRSNDGGALGADSVNIETKNVY
HHHHHHCEEEEEEECCCCEEEEEEEEEECCCCCCEEEEEECCCCCEECCCCEEEEEEEEE
LDFNIPSTPLNVKVGIQPISDSYKGVFINADAAAVLAAAKMGDATVALGFARLDDADTFT
EEECCCCCCEEEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCEEEEEEEEECCCCCEEE
IGSAANRSATTPGKATRDLYIVDGKYNISKDLKVGGSYYALLADQNDTTLNFALHTIGVN
ECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCEEEEEEECCCCCEEEEEEEEEECC
AEYKFDPVTIDGFLLYQRGRTSGTAKVDFGGWAANATAKMKVGPGTLKTSFLYASGEQNA
CEEEECCEEEEEEEEEECCCCCCEEEEECCCEECCCEEEEEECCCCEEEEEEEECCCCCC
NPDNSSYMGVTNETSGANGEHSFYESEMMIMFRNKYNIGDRALVYNVQNVIGGFVGYNAN
CCCCCCEEEEECCCCCCCCCCCEECCEEEEEEECCCCCCCEEEEEEHHHHHHHHHCCCCC
ITSKAFAIANVGFVAADKDNTTYGNARVTGEAGHKSKYLGTELNAEVGYKVFDNLTASVQ
CCCCEEEEEECEEEEECCCCCEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
GAYVILGDYFKDTAGTAANPEDPRNPYLTRVMLNYAF
CEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA