| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is pleD [H]
Identifier: 39998353
GI number: 39998353
Start: 3579182
End: 3579877
Strand: Direct
Name: pleD [H]
Synonym: GSU3263
Alternate gene names: 39998353
Gene position: 3579182-3579877 (Clockwise)
Preceding gene: 39998352
Following gene: 39998354
Centisome position: 93.84
GC content: 64.22
Gene sequence:
>696_bases ATGAAGGAACCACGCGTACTGCTCGTTGATGACGAGCGATTCTTCCTGAATCTCCAGCAGGAGTTTCTGGCGGATTCCCC CGTGCGGGTCATCACCGCCCAGAACGGCCGGGAGGCGCTTGACATGATCCAGCGGGACCGGCCGGGCATCGTCTACCTGG ATCTACGGATGCCTGAACTTGATGGTGCCGCCTGTTGCTCCGCCATCAAGAACAACCCCGATCTCAGGAACACGCCGGTG GTCATGGTGGTGAGCGAGGGTAAGCCCCGCGATCGGGAGGTCTGCCTGGATGCCGGGTGCAACGGCATCATCAGCAAGCC GCTGGACCGGATTCAGTTCCTGTCGGTGGGTCGGCGGCTCTTCCCGGCCATTGAACGCCGCCAGCCCCGCTATCCCTTCT CGGCCCTCGCCTTCTTCCGGATCCGGGATACCAGCTTCCACGGCACCATCGCCGACATCAGCCTCGGCGGCGCCTATATC GCGTGTCGCTGCGACCTCGCCGCAAAGGAGGATATCCGTCTCGGCTTTATCCTCGACAACACGGCGGTCGTCGAATGCCG GGCGCGGGTCGCCTGGACGAACCAGGGGGGAATGCGCCCCCGCAAGAGCCTTCCGGACGGATTCGGCGTCCAGTTCCAGG CCATGGAGCCTCCTCACCAGGAGGTTGTCCGGCAGCTCGTGGCGAGGCTCGGATGA
Upstream 100 bases:
>100_bases GAAGCTGGAGTTCGAACGGGCGGCCGATCTCAGGGATCAGATCAAAAAACTGGAAGAAATGGAGCTGCGGCTGCGCTGAC CGCTCCACGGGGGACATCCG
Downstream 100 bases:
>100_bases TCCGCCCCGCCTGGCTCACCCGCCCCAGTCTCTCCTGGGCACTCTACGACTTCGCCAACACAATCTTCTCCATGAGCGTG GTGACGCTCTATTTCCCCTT
Product: response regulator
Products: NA
Alternate protein names: Stalked cell differentiation-controlling protein; Diguanylate cyclase; DGC; Diguanylate kinase [H]
Number of amino acids: Translated: 231; Mature: 231
Protein sequence:
>231_residues MKEPRVLLVDDERFFLNLQQEFLADSPVRVITAQNGREALDMIQRDRPGIVYLDLRMPELDGAACCSAIKNNPDLRNTPV VMVVSEGKPRDREVCLDAGCNGIISKPLDRIQFLSVGRRLFPAIERRQPRYPFSALAFFRIRDTSFHGTIADISLGGAYI ACRCDLAAKEDIRLGFILDNTAVVECRARVAWTNQGGMRPRKSLPDGFGVQFQAMEPPHQEVVRQLVARLG
Sequences:
>Translated_231_residues MKEPRVLLVDDERFFLNLQQEFLADSPVRVITAQNGREALDMIQRDRPGIVYLDLRMPELDGAACCSAIKNNPDLRNTPV VMVVSEGKPRDREVCLDAGCNGIISKPLDRIQFLSVGRRLFPAIERRQPRYPFSALAFFRIRDTSFHGTIADISLGGAYI ACRCDLAAKEDIRLGFILDNTAVVECRARVAWTNQGGMRPRKSLPDGFGVQFQAMEPPHQEVVRQLVARLG >Mature_231_residues MKEPRVLLVDDERFFLNLQQEFLADSPVRVITAQNGREALDMIQRDRPGIVYLDLRMPELDGAACCSAIKNNPDLRNTPV VMVVSEGKPRDREVCLDAGCNGIISKPLDRIQFLSVGRRLFPAIERRQPRYPFSALAFFRIRDTSFHGTIADISLGGAYI ACRCDLAAKEDIRLGFILDNTAVVECRARVAWTNQGGMRPRKSLPDGFGVQFQAMEPPHQEVVRQLVARLG
Specific function: Catalyzes the condensation of two GTP molecules to the cyclic dinucleotide di-GMP (c-di-GMP), which acts as a secondary messenger [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm. Note=Phosphorylated PleD localizes to the differentiating pole [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 response regulatory domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR011006 - InterPro: IPR000160 - InterPro: IPR001789 [H]
Pfam domain/function: PF00990 GGDEF; PF00072 Response_reg [H]
EC number: =2.7.7.65 [H]
Molecular weight: Translated: 25941; Mature: 25941
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEPRVLLVDDERFFLNLQQEFLADSPVRVITAQNGREALDMIQRDRPGIVYLDLRMPEL CCCCCEEEEECCCEEEEEHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEEECCCC DGAACCSAIKNNPDLRNTPVVMVVSEGKPRDREVCLDAGCNGIISKPLDRIQFLSVGRRL CHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHH FPAIERRQPRYPFSALAFFRIRDTSFHGTIADISLGGAYIACRCDLAAKEDIRLGFILDN HHHHHHCCCCCCHHHEEEEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCEEEEEEECC TAVVECRARVAWTNQGGMRPRKSLPDGFGVQFQAMEPPHQEVVRQLVARLG CEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCC >Mature Secondary Structure MKEPRVLLVDDERFFLNLQQEFLADSPVRVITAQNGREALDMIQRDRPGIVYLDLRMPEL CCCCCEEEEECCCEEEEEHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEEECCCC DGAACCSAIKNNPDLRNTPVVMVVSEGKPRDREVCLDAGCNGIISKPLDRIQFLSVGRRL CHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHH FPAIERRQPRYPFSALAFFRIRDTSFHGTIADISLGGAYIACRCDLAAKEDIRLGFILDN HHHHHHCCCCCCHHHEEEEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCEEEEEEECC TAVVECRARVAWTNQGGMRPRKSLPDGFGVQFQAMEPPHQEVVRQLVARLG CEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA