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The map label for this gene is 39998262

Identifier: 39998262

GI number: 39998262

Start: 3481200

End: 3481685

Strand: Direct

Name: 39998262

Synonym: GSU3172

Alternate gene names: NA

Gene position: 3481200-3481685 (Clockwise)

Preceding gene: 39998261

Following gene: 39998263

Centisome position: 91.27

GC content: 58.64

Gene sequence:

>486_bases
ATGTCGAATGAAGCATCCGTAGCACCGAAGGAACGGGTGAACATCGTCTACCGTCCCGCCGATGGCGAAGGGCGCGAGGA
AGTGGAGCTTCCCCTTAAAATCCTGGTGTTAGGGGACTTTACCGGGCAACCGGACGAGCGGCCCGTGGAGAAGCGGGACC
CGGTGCCAGTGGACAAAGAAAACTTCAGCGAGGTCATGAAGGCCCAGAGAATCATGCTGAACATCGCCGTCTCCAACCGG
CTTTACGATGCACCCGACGAGGAGCTGCCGGTGAAGCTGAAAATGGAATCCCTGAGAGATTTCGGCCCGGAGGCCATTGT
GGAGCAGGTCCCGGAGATGAAACGCCTGTTGGAGTTGCGCGAGGCACTGCGGGCGCTGAAGGCTCCCCTCTCCAACATTC
CGGACTTCCGGAGAAAAATTCAGGAACTGGTCACTGACGATGCCGCCCGCGCCAAGCTGCTGGCTGAAATAGGGATCGAA
GGGTAA

Upstream 100 bases:

>100_bases
GGCAGGCTGAACCAGTACGGTTGACAGAAGGGTAAAGCTAAATTCAACGGGATACACGCCACGGACGGCACGTTCCCATC
ACACACAAAAGGAGAACTAC

Downstream 100 bases:

>100_bases
GGAGGAAACAATGAGCTCAGAGATGAACGGCACTGCCCCCTTTCAGGACCAGGGTGCGACTGACGTGTCGCTTTTGGAGG
ATATCGTCCGGGTCACTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Cytoplasmic Protein; Type VI Secretion Protein VasQ; Intracellular Growth Locus Subunit A; Protein ImpB; Conserved Protein; Type VI Secretion System Protein ImpB

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MSNEASVAPKERVNIVYRPADGEGREEVELPLKILVLGDFTGQPDERPVEKRDPVPVDKENFSEVMKAQRIMLNIAVSNR
LYDAPDEELPVKLKMESLRDFGPEAIVEQVPEMKRLLELREALRALKAPLSNIPDFRRKIQELVTDDAARAKLLAEIGIE
G

Sequences:

>Translated_161_residues
MSNEASVAPKERVNIVYRPADGEGREEVELPLKILVLGDFTGQPDERPVEKRDPVPVDKENFSEVMKAQRIMLNIAVSNR
LYDAPDEELPVKLKMESLRDFGPEAIVEQVPEMKRLLELREALRALKAPLSNIPDFRRKIQELVTDDAARAKLLAEIGIE
G
>Mature_160_residues
SNEASVAPKERVNIVYRPADGEGREEVELPLKILVLGDFTGQPDERPVEKRDPVPVDKENFSEVMKAQRIMLNIAVSNRL
YDAPDEELPVKLKMESLRDFGPEAIVEQVPEMKRLLELREALRALKAPLSNIPDFRRKIQELVTDDAARAKLLAEIGIEG

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18185; Mature: 18054

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNEASVAPKERVNIVYRPADGEGREEVELPLKILVLGDFTGQPDERPVEKRDPVPVDKE
CCCCCCCCHHHHCEEEEECCCCCCCCHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHH
NFSEVMKAQRIMLNIAVSNRLYDAPDEELPVKLKMESLRDFGPEAIVEQVPEMKRLLELR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHH
EALRALKAPLSNIPDFRRKIQELVTDDAARAKLLAEIGIEG
HHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SNEASVAPKERVNIVYRPADGEGREEVELPLKILVLGDFTGQPDERPVEKRDPVPVDKE
CCCCCCCHHHHCEEEEECCCCCCCCHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHH
NFSEVMKAQRIMLNIAVSNRLYDAPDEELPVKLKMESLRDFGPEAIVEQVPEMKRLLELR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHH
EALRALKAPLSNIPDFRRKIQELVTDDAARAKLLAEIGIEG
HHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA