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The map label for this gene is bphB [H]

Identifier: 39998238

GI number: 39998238

Start: 3455690

End: 3457705

Strand: Reverse

Name: bphB [H]

Synonym: GSU3148

Alternate gene names: 39998238

Gene position: 3457705-3455690 (Counterclockwise)

Preceding gene: 39998239

Following gene: 308513339

Centisome position: 90.65

GC content: 63.29

Gene sequence:

>2016_bases
ATGGACAGCCCGCCCCTCTATAACAGCAGGATCTTCGATACCTATCTGAAGCTCCTCGCACAACGGTATCCTCACGTTCG
GACCGATGAGGTGCTCAGCCATGCCGGGATGTCTGAGCACGAGGTCGCGGACCCCGGCCAGTGGTTCACCCAGCAGCAGG
CGGATCGCTTTCACGAGGTGCTCACGCGGATGACCGGCAACCCCGGCATCGCTCGCGAGGCGGGCCGTTACGCCGCATCG
CCCGAAGCGCTCGGCCTTGTACGGCAGTACGTCCTCGGACTGGTGGGGCCTGCCCTCGGCTATGCCCTCCTCAACCGCAC
GGCAGCCCTCTTCACCCGGTCGTCGACGTTCGAGTCCCGGAAGATCGGGGACAACAGGATCGAGGTCACGGTTCGCTTCA
GGCCGGGGGTGAGTGAGCGGCCATACCAGTGCGCCAACCGCACGGGATTCCTCGAGGCGCTTGTCGTTATCTTCAGCCGG
TGTCTTCCGGAAATCGAGCATCCCGAGTGCATTTTTCAGGGCGGAGGGGTCTGTCGCTACATAATTTCCTGGCCTAAGGG
GCATGCCGATCTCTGGCGGACGGTGCGCCGCTGGGGGCTCCTCGGCGGGACGGTCCTCGGGCTTGCCACTCTTCTCCTGA
GCCCCTCTCTGTTCCCCGTTGTGGCAGCGGTGGCCATTCCCCTGGTCCTGCTGTTTTTTCTTGCCGCCGAGCGGGCCGAG
AACAAGGATTTGAGCGCGGCCGTCGACAACCTGCGGGATTCTACCGAAAAGCTGCTCGGCCAGTCTCAGTCAAACAGCGA
CAATGCGCTGCTCGTGAGTGAAATCGGGCAGGTGGTCAGCAGTAAGAGCGATATTGAGCACATTCTGACCGCTATTGCCG
TCCTACTGGAGAAGCGGCTCGACTACGACCGGGGCGTGATCATGATGGCCGATGCCGGCGGGAGCGCTCTCAGGGTGCTG
GCCAGCTACGGGTTCGACGAGGCGGGTCGGCGGGTCATGCACGAAACGCCCATTGCGCTGGACGGCGTCGGTCCCCGCGG
CGTCGTGGCCGCTTCGTTCCTCGACCAGAAGCCATTCCTGGTGAACGACCTTGATGAGATTAATCATCTCATCCCGCCGC
TGCATCGGGAGTTGGGCCGCCGGCTGGGCATTCGTTCCTTCATCAGCTGCCCCATTGTTTGCGAGGGGCAATCCCTCGGC
GTACTGGCGGTGGATACGATACGCACCGGCAGGCCGCTGCTCCAGAGCGACCTGAGCCTCCTTATGGGGATTGCGCCGGT
GATCGGCATCAGCATTCACAACGCCGAGCACCTGGCCCGGGAACAACGGCAGGCTGCCCTGCTGGAGGTTGCCAACCAGG
AGTTGGAGGCGTTCTGCTATACCGTTGCCCACGACCTCCGGGCACCACTCCGGGCCATCAACGGCTATTGCGCCGTCATC
CGTGAGGAGTGCGACGACCGCCTCCCGCCGCCCTCTCCGGTCTATTTTTCCCGGATCGGCGCGGCAGCGGTGCGGATGGG
GGAGTTGATCGACGATCTGCTTGCTCTGTACCGGGTAACCCGCAGCGAACTGGTATGGGAGGAGATTGATCTGAGCGCCC
TGGTGGCTGAGGTGGCGGAGGAGCTGCAGCAGCGGGAGGCAGCCCGCTCGGTGGAGTTTGCCATTGCCGCCGGCGTCACT
GTTCGGGGAGATCGGAAGTTGCTGCGGATCGCTCTGGAAAACCTGCTGGGCAATGCCTTGAAGTATACCGGCATGCGCCC
CCGGGCACTCATCGAATTCGGCACGGCAGAGGTAGGCGGTGTTACTGCCTGCTTCATCCGGGACAATGGCACCGGTTTCA
ACATGCGGTATGTCGACAAGTTATTCCGGCCCTTCCAACGGCTCCACCGGGACGATGAATTCGAGGGGACCGGCATCGGC
TTGGCTACCGTGCACAGGATTGTGAGCCGCCACGGCGGACGGGTCTGGGCCGAAGCCGAAGAGGGTCGGGGCGCCGTATT
CTACATTGCCCTTTGA

Upstream 100 bases:

>100_bases
AGCTTGCCCGCATACCCCGGTTCCGGTAAGCTCGACCGCAACACCCCCGCCGTTCCTCTCGCCATCATCCGGCCGGCGTT
TTCGGAGTTGCGCGTCATCG

Downstream 100 bases:

>100_bases
CTCTTCGACCGTCGCCCCCGTACAATCCGTTCATGGACAATGCTCTCCTCTCCGACGTGACCGGCGTAATCCTCGTGGGC
GGCCGGAGCCGCCGCATGGG

Product: sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 671; Mature: 671

Protein sequence:

>671_residues
MDSPPLYNSRIFDTYLKLLAQRYPHVRTDEVLSHAGMSEHEVADPGQWFTQQQADRFHEVLTRMTGNPGIAREAGRYAAS
PEALGLVRQYVLGLVGPALGYALLNRTAALFTRSSTFESRKIGDNRIEVTVRFRPGVSERPYQCANRTGFLEALVVIFSR
CLPEIEHPECIFQGGGVCRYIISWPKGHADLWRTVRRWGLLGGTVLGLATLLLSPSLFPVVAAVAIPLVLLFFLAAERAE
NKDLSAAVDNLRDSTEKLLGQSQSNSDNALLVSEIGQVVSSKSDIEHILTAIAVLLEKRLDYDRGVIMMADAGGSALRVL
ASYGFDEAGRRVMHETPIALDGVGPRGVVAASFLDQKPFLVNDLDEINHLIPPLHRELGRRLGIRSFISCPIVCEGQSLG
VLAVDTIRTGRPLLQSDLSLLMGIAPVIGISIHNAEHLAREQRQAALLEVANQELEAFCYTVAHDLRAPLRAINGYCAVI
REECDDRLPPPSPVYFSRIGAAAVRMGELIDDLLALYRVTRSELVWEEIDLSALVAEVAEELQQREAARSVEFAIAAGVT
VRGDRKLLRIALENLLGNALKYTGMRPRALIEFGTAEVGGVTACFIRDNGTGFNMRYVDKLFRPFQRLHRDDEFEGTGIG
LATVHRIVSRHGGRVWAEAEEGRGAVFYIAL

Sequences:

>Translated_671_residues
MDSPPLYNSRIFDTYLKLLAQRYPHVRTDEVLSHAGMSEHEVADPGQWFTQQQADRFHEVLTRMTGNPGIAREAGRYAAS
PEALGLVRQYVLGLVGPALGYALLNRTAALFTRSSTFESRKIGDNRIEVTVRFRPGVSERPYQCANRTGFLEALVVIFSR
CLPEIEHPECIFQGGGVCRYIISWPKGHADLWRTVRRWGLLGGTVLGLATLLLSPSLFPVVAAVAIPLVLLFFLAAERAE
NKDLSAAVDNLRDSTEKLLGQSQSNSDNALLVSEIGQVVSSKSDIEHILTAIAVLLEKRLDYDRGVIMMADAGGSALRVL
ASYGFDEAGRRVMHETPIALDGVGPRGVVAASFLDQKPFLVNDLDEINHLIPPLHRELGRRLGIRSFISCPIVCEGQSLG
VLAVDTIRTGRPLLQSDLSLLMGIAPVIGISIHNAEHLAREQRQAALLEVANQELEAFCYTVAHDLRAPLRAINGYCAVI
REECDDRLPPPSPVYFSRIGAAAVRMGELIDDLLALYRVTRSELVWEEIDLSALVAEVAEELQQREAARSVEFAIAAGVT
VRGDRKLLRIALENLLGNALKYTGMRPRALIEFGTAEVGGVTACFIRDNGTGFNMRYVDKLFRPFQRLHRDDEFEGTGIG
LATVHRIVSRHGGRVWAEAEEGRGAVFYIAL
>Mature_671_residues
MDSPPLYNSRIFDTYLKLLAQRYPHVRTDEVLSHAGMSEHEVADPGQWFTQQQADRFHEVLTRMTGNPGIAREAGRYAAS
PEALGLVRQYVLGLVGPALGYALLNRTAALFTRSSTFESRKIGDNRIEVTVRFRPGVSERPYQCANRTGFLEALVVIFSR
CLPEIEHPECIFQGGGVCRYIISWPKGHADLWRTVRRWGLLGGTVLGLATLLLSPSLFPVVAAVAIPLVLLFFLAAERAE
NKDLSAAVDNLRDSTEKLLGQSQSNSDNALLVSEIGQVVSSKSDIEHILTAIAVLLEKRLDYDRGVIMMADAGGSALRVL
ASYGFDEAGRRVMHETPIALDGVGPRGVVAASFLDQKPFLVNDLDEINHLIPPLHRELGRRLGIRSFISCPIVCEGQSLG
VLAVDTIRTGRPLLQSDLSLLMGIAPVIGISIHNAEHLAREQRQAALLEVANQELEAFCYTVAHDLRAPLRAINGYCAVI
REECDDRLPPPSPVYFSRIGAAAVRMGELIDDLLALYRVTRSELVWEEIDLSALVAEVAEELQQREAARSVEFAIAAGVT
VRGDRKLLRIALENLLGNALKYTGMRPRALIEFGTAEVGGVTACFIRDNGTGFNMRYVDKLFRPFQRLHRDDEFEGTGIG
LATVHRIVSRHGGRVWAEAEEGRGAVFYIAL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=213, Percent_Identity=30.5164319248826, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1790436, Length=215, Percent_Identity=28.8372093023256, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI48994928, Length=243, Percent_Identity=25.9259259259259, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1790346, Length=208, Percent_Identity=32.2115384615385, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786600, Length=239, Percent_Identity=26.7782426778243, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1786783, Length=225, Percent_Identity=28.8888888888889, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI145693157, Length=242, Percent_Identity=25.6198347107438, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1790861, Length=206, Percent_Identity=29.6116504854369, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788393, Length=219, Percent_Identity=28.310502283105, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789149, Length=266, Percent_Identity=25.187969924812, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1787894, Length=211, Percent_Identity=29.3838862559242, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 73905; Mature: 73905

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSPPLYNSRIFDTYLKLLAQRYPHVRTDEVLSHAGMSEHEVADPGQWFTQQQADRFHEV
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
LTRMTGNPGIAREAGRYAASPEALGLVRQYVLGLVGPALGYALLNRTAALFTRSSTFESR
HHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
KIGDNRIEVTVRFRPGVSERPYQCANRTGFLEALVVIFSRCLPEIEHPECIFQGGGVCRY
CCCCCEEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCEEEE
IISWPKGHADLWRTVRRWGLLGGTVLGLATLLLSPSLFPVVAAVAIPLVLLFFLAAERAE
EECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
NKDLSAAVDNLRDSTEKLLGQSQSNSDNALLVSEIGQVVSSKSDIEHILTAIAVLLEKRL
CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
DYDRGVIMMADAGGSALRVLASYGFDEAGRRVMHETPIALDGVGPRGVVAASFLDQKPFL
CCCCCEEEEECCCCHHHHHHHHCCCCHHCCHHHHCCCCEECCCCCCHHHHHHHHCCCCCH
VNDLDEINHLIPPLHRELGRRLGIRSFISCPIVCEGQSLGVLAVDTIRTGRPLLQSDLSL
HCCHHHHHHHCCHHHHHHHHHHCHHHHHCCCEEECCCCCCEEEECCCCCCCHHHHHHHHH
LMGIAPVIGISIHNAEHLAREQRQAALLEVANQELEAFCYTVAHDLRAPLRAINGYCAVI
HHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REECDDRLPPPSPVYFSRIGAAAVRMGELIDDLLALYRVTRSELVWEEIDLSALVAEVAE
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELQQREAARSVEFAIAAGVTVRGDRKLLRIALENLLGNALKYTGMRPRALIEFGTAEVGG
HHHHHHHHHHHHHHHEECCEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCC
VTACFIRDNGTGFNMRYVDKLFRPFQRLHRDDEFEGTGIGLATVHRIVSRHGGRVWAEAE
EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
EGRGAVFYIAL
CCCCEEEEEEC
>Mature Secondary Structure
MDSPPLYNSRIFDTYLKLLAQRYPHVRTDEVLSHAGMSEHEVADPGQWFTQQQADRFHEV
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
LTRMTGNPGIAREAGRYAASPEALGLVRQYVLGLVGPALGYALLNRTAALFTRSSTFESR
HHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
KIGDNRIEVTVRFRPGVSERPYQCANRTGFLEALVVIFSRCLPEIEHPECIFQGGGVCRY
CCCCCEEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCEEEE
IISWPKGHADLWRTVRRWGLLGGTVLGLATLLLSPSLFPVVAAVAIPLVLLFFLAAERAE
EECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
NKDLSAAVDNLRDSTEKLLGQSQSNSDNALLVSEIGQVVSSKSDIEHILTAIAVLLEKRL
CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
DYDRGVIMMADAGGSALRVLASYGFDEAGRRVMHETPIALDGVGPRGVVAASFLDQKPFL
CCCCCEEEEECCCCHHHHHHHHCCCCHHCCHHHHCCCCEECCCCCCHHHHHHHHCCCCCH
VNDLDEINHLIPPLHRELGRRLGIRSFISCPIVCEGQSLGVLAVDTIRTGRPLLQSDLSL
HCCHHHHHHHCCHHHHHHHHHHCHHHHHCCCEEECCCCCCEEEECCCCCCCHHHHHHHHH
LMGIAPVIGISIHNAEHLAREQRQAALLEVANQELEAFCYTVAHDLRAPLRAINGYCAVI
HHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REECDDRLPPPSPVYFSRIGAAAVRMGELIDDLLALYRVTRSELVWEEIDLSALVAEVAE
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELQQREAARSVEFAIAAGVTVRGDRKLLRIALENLLGNALKYTGMRPRALIEFGTAEVGG
HHHHHHHHHHHHHHHEECCEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCC
VTACFIRDNGTGFNMRYVDKLFRPFQRLHRDDEFEGTGIGLATVHRIVSRHGGRVWAEAE
EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
EGRGAVFYIAL
CCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]