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The map label for this gene is slyD [H]

Identifier: 39998233

GI number: 39998233

Start: 3451151

End: 3451585

Strand: Direct

Name: slyD [H]

Synonym: GSU3143

Alternate gene names: 39998233

Gene position: 3451151-3451585 (Clockwise)

Preceding gene: 39998228

Following gene: 39998234

Centisome position: 90.48

GC content: 61.38

Gene sequence:

>435_bases
ATGAGAACAGCTCAATCGGGCGACATCGTCTTCATTCACTACATCGGTACCCTGGACAACGGCAGAATCTTCGACAGCAC
CACCGACGAGGCGCCACTGCGCTTCACCATTGGCAAAAACGAAATCTTTCCCGCCCTGGAGCGCCAAATCATCGGCATGC
GGCCGGGCGAGGCCAGGAACATCCTGATCGCCGCCGCAGACGCCTATGGTCCGCGCCGGGCGGAAAACATGCTGACCCTG
GGGCGGGACTCCTTCCCCGCGGACCGTCCCATCTCGGTTGGTCAGAAACTGCGCCTTGAGTTCAACGGCAGCGCCGAGCG
GGTCATGCTTGTGGTGGAGGTGACCGACGCCCATGTGGTTCTGGATGGTAATCATCCCCTGGCCGGTTGCGACCTGACCT
TTGCGCTCCGGCTCGACGGAATCGAAAACGCCTGA

Upstream 100 bases:

>100_bases
GCACAGCCGAACAAGACACTCACGACTGAGACCATGCCGAGGCAACCGGTGGTTATAGTTTAGGCACCCGTGACGGCCCG
GCAGGAAGGAGCATCCAGAC

Downstream 100 bases:

>100_bases
GCGGGCTATGGTCCGGCAACGGTGACCGCTCGATTAATTCGTTGCCCGCCGTCGGCAGCTGTGTTAACTGTTTCACCGGA
ACAAGGAGAAGACGATGGGA

Product: peptidyl-prolyl cis-trans isomerase, FKBP-type

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MRTAQSGDIVFIHYIGTLDNGRIFDSTTDEAPLRFTIGKNEIFPALERQIIGMRPGEARNILIAAADAYGPRRAENMLTL
GRDSFPADRPISVGQKLRLEFNGSAERVMLVVEVTDAHVVLDGNHPLAGCDLTFALRLDGIENA

Sequences:

>Translated_144_residues
MRTAQSGDIVFIHYIGTLDNGRIFDSTTDEAPLRFTIGKNEIFPALERQIIGMRPGEARNILIAAADAYGPRRAENMLTL
GRDSFPADRPISVGQKLRLEFNGSAERVMLVVEVTDAHVVLDGNHPLAGCDLTFALRLDGIENA
>Mature_144_residues
MRTAQSGDIVFIHYIGTLDNGRIFDSTTDEAPLRFTIGKNEIFPALERQIIGMRPGEARNILIAAADAYGPRRAENMLTL
GRDSFPADRPISVGQKLRLEFNGSAERVMLVVEVTDAHVVLDGNHPLAGCDLTFALRLDGIENA

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 15779; Mature: 15779

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTAQSGDIVFIHYIGTLDNGRIFDSTTDEAPLRFTIGKNEIFPALERQIIGMRPGEARN
CCCCCCCCEEEEEEEEECCCCEEECCCCCCCCEEEEECCCCCCHHHHHEEECCCCCCCCE
ILIAAADAYGPRRAENMLTLGRDSFPADRPISVGQKLRLEFNGSAERVMLVVEVTDAHVV
EEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCEEEE
LDGNHPLAGCDLTFALRLDGIENA
EECCCCEECCCEEEEEEECCCCCC
>Mature Secondary Structure
MRTAQSGDIVFIHYIGTLDNGRIFDSTTDEAPLRFTIGKNEIFPALERQIIGMRPGEARN
CCCCCCCCEEEEEEEEECCCCEEECCCCCCCCEEEEECCCCCCHHHHHEEECCCCCCCCE
ILIAAADAYGPRRAENMLTLGRDSFPADRPISVGQKLRLEFNGSAERVMLVVEVTDAHVV
EEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCEEEE
LDGNHPLAGCDLTFALRLDGIENA
EECCCCEECCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]