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The map label for this gene is rho [H]

Identifier: 39998198

GI number: 39998198

Start: 3410940

End: 3412187

Strand: Reverse

Name: rho [H]

Synonym: GSU3108

Alternate gene names: 39998198

Gene position: 3412187-3410940 (Counterclockwise)

Preceding gene: 39998200

Following gene: 39998197

Centisome position: 89.46

GC content: 58.65

Gene sequence:

>1248_bases
ATGAACCTGCAGGAGCTTAAAGGGAAAAAAATCAACGAACTGGCTGCCATTGCCAAGGGGTTGAACATTGAGGGCGCGTC
CAGTCTGCGCAAGCAGGACCTGATCTTCGCCATTCTCAACGCCCAGACCGAAAAGAACGGCATGATCTTCGGCGAGGGGG
TTCTGGAGTGCCTTCCCGACGGCTTCGGCTTTCTGAGGGCGCCGGATTACAACTACCTGCCGGGCCCCGACGACATCTAC
GTATCGCCGTCGCAGATCCGCCGCTTCAACCTCCATACGGGCGATACCGTTTCGGGGCAGATCCGTCCTCCCAAGGAGGG
TGAGCGCTATTTCGCTCTTCTCAAGGTGGAGACGGTCAACTTCGAGCCCCCTGAGGTCGCCCGCGACAAGATTCTGTTCG
ACAACCTGACTCCTCTCTATCCCGACGAAAAGCTCAAACTCGAAACCGCGCCGGACAATATGTCGATGCGCGTCATGGAG
CTTGTCTCCCCTATCGGCAAGGGGCAACGGGGGCTCATCGTGGCGCCGCCGCGTACCGGCAAGACGATGCTCATTCAGAA
CATCGCCAATTCCATTGCCGAAAATCACCCCGAAGTCTATCTGATCGTGCTGCTCATCGACGAACGGCCCGAAGAGGTGA
CCGACATGCAGCGCTCGGTCAAGGGGGAAGTAGTCTCCTCCACCTTTGACGAACCGGCCACCCGCCACGTGCAGGTGGCT
GAGATGGTCATCGAAAAGGCCAAGCGCCTGGTGGAGCACAAGCGCGACGTGGTGATTCTCCTCGACTCCATAACCCGTCT
TGCCCGGGCTTACAATACGGTGCTTCCTCCTTCCGGCAAAATCCTCACCGGCGGGGTTGACGCCAACGCCCTCCAGAAGC
CCAAGCGCTTTTTCGGCGCTGCCCGCAATATCGAAGAGGGGGGGTCTCTGACCATCATCGCGTCGGCCCTGGTGGATACC
GGCAGCAAGATGGATGAGGTTATCTTCGAAGAGTTCAAGGGGACCGGAAACATGGAGGTTCACCTGGACCGCAAACTGGT
GGAGAAGCGGACCTTCCCGGCCATCGACATCAACAAGTCCGGCACCCGCAAGGAAGAGCTGCTGGTGGAGAAGAGCGCGC
TCAACCGCATCTGGATTCTGCGCAAGGTCCTCCATCCCATGAACGTGGTCGACAGCATGGAGTTCCTCTTGGAGAAGCTC
TCCGAGACCAAGGACAATCAGGCGTTTCTCGACTCCATGAGCAGGTAG

Upstream 100 bases:

>100_bases
TCCCCCACATTTAACGCGTCCACTTGCCTACTTATGATATCCATGTCCAGCAAAGCGCTCGCATGCGTCGGGGTCCATGC
GCGCGCGTACAGGAGAGCCG

Downstream 100 bases:

>100_bases
CGGCACGGTTGCCGGCCAACCGCAAGCCCGGCCCGCATAGGCAAAAAAGCCTTGAAAAAATAAAATCAGGGTGCTAAATT
CATACCTTTCCAGCACATAA

Product: transcription termination factor Rho

Products: NA

Alternate protein names: ATP-dependent helicase Rho [H]

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MNLQELKGKKINELAAIAKGLNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLECLPDGFGFLRAPDYNYLPGPDDIY
VSPSQIRRFNLHTGDTVSGQIRPPKEGERYFALLKVETVNFEPPEVARDKILFDNLTPLYPDEKLKLETAPDNMSMRVME
LVSPIGKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVA
EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVLPPSGKILTGGVDANALQKPKRFFGAARNIEEGGSLTIIASALVDT
GSKMDEVIFEEFKGTGNMEVHLDRKLVEKRTFPAIDINKSGTRKEELLVEKSALNRIWILRKVLHPMNVVDSMEFLLEKL
SETKDNQAFLDSMSR

Sequences:

>Translated_415_residues
MNLQELKGKKINELAAIAKGLNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLECLPDGFGFLRAPDYNYLPGPDDIY
VSPSQIRRFNLHTGDTVSGQIRPPKEGERYFALLKVETVNFEPPEVARDKILFDNLTPLYPDEKLKLETAPDNMSMRVME
LVSPIGKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVA
EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVLPPSGKILTGGVDANALQKPKRFFGAARNIEEGGSLTIIASALVDT
GSKMDEVIFEEFKGTGNMEVHLDRKLVEKRTFPAIDINKSGTRKEELLVEKSALNRIWILRKVLHPMNVVDSMEFLLEKL
SETKDNQAFLDSMSR
>Mature_415_residues
MNLQELKGKKINELAAIAKGLNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLECLPDGFGFLRAPDYNYLPGPDDIY
VSPSQIRRFNLHTGDTVSGQIRPPKEGERYFALLKVETVNFEPPEVARDKILFDNLTPLYPDEKLKLETAPDNMSMRVME
LVSPIGKGQRGLIVAPPRTGKTMLIQNIANSIAENHPEVYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVA
EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVLPPSGKILTGGVDANALQKPKRFFGAARNIEEGGSLTIIASALVDT
GSKMDEVIFEEFKGTGNMEVHLDRKLVEKRTFPAIDINKSGTRKEELLVEKSALNRIWILRKVLHPMNVVDSMEFLLEKL
SETKDNQAFLDSMSR

Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]

COG id: COG1158

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rho family [H]

Homologues:

Organism=Escherichia coli, GI1790217, Length=418, Percent_Identity=69.8564593301435, Blast_Score=615, Evalue=1e-177,

Paralogues:

None

Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR011129
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR011112
- InterPro:   IPR011113
- InterPro:   IPR004665 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF07498 Rho_N; PF07497 Rho_RNA_bind [H]

EC number: NA

Molecular weight: Translated: 46391; Mature: 46391

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLQELKGKKINELAAIAKGLNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLECLPD
CCHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEECCCCCCCEEEECHHHHHCCC
GFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVSGQIRPPKEGERYFALLKVETVN
CCCCEECCCCCCCCCCCCEEECHHHHEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEC
FEPPEVARDKILFDNLTPLYPDEKLKLETAPDNMSMRVMELVSPIGKGQRGLIVAPPRTG
CCCCHHHHHHEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCC
KTMLIQNIANSIAENHPEVYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVA
CHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHCCCCCHHHHHHHH
EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVLPPSGKILTGGVDANALQKPKRFFGA
HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHH
ARNIEEGGSLTIIASALVDTGSKMDEVIFEEFKGTGNMEVHLDRKLVEKRTFPAIDINKS
HCCCCCCCCEEEEEHHHHHCCCHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCEEECCCC
GTRKEELLVEKSALNRIWILRKVLHPMNVVDSMEFLLEKLSETKDNQAFLDSMSR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
>Mature Secondary Structure
MNLQELKGKKINELAAIAKGLNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLECLPD
CCHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEECCCCCCCEEEECHHHHHCCC
GFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVSGQIRPPKEGERYFALLKVETVN
CCCCEECCCCCCCCCCCCEEECHHHHEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEC
FEPPEVARDKILFDNLTPLYPDEKLKLETAPDNMSMRVMELVSPIGKGQRGLIVAPPRTG
CCCCHHHHHHEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCC
KTMLIQNIANSIAENHPEVYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVA
CHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHCCCCCHHHHHHHH
EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVLPPSGKILTGGVDANALQKPKRFFGA
HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHH
ARNIEEGGSLTIIASALVDTGSKMDEVIFEEFKGTGNMEVHLDRKLVEKRTFPAIDINKS
HCCCCCCCCEEEEEHHHHHCCCHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCEEECCCC
GTRKEELLVEKSALNRIWILRKVLHPMNVVDSMEFLLEKLSETKDNQAFLDSMSR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 14500782 [H]