Click here to switch to the map view.

The map label for this gene is flgH

Identifier: 39998139

GI number: 39998139

Start: 3351462

End: 3352127

Strand: Reverse

Name: flgH

Synonym: GSU3048

Alternate gene names: 39998139

Gene position: 3352127-3351462 (Counterclockwise)

Preceding gene: 39998141

Following gene: 39998138

Centisome position: 87.89

GC content: 61.71

Gene sequence:

>666_bases
ATGTCAATAATCTGTCTCGCCCTGGCCGGCTGCGCCGTGGAGAAGACCGAGGTGCGGACACCGACCTTTGACGAACAGCT
CCGGCCGGCCCCGCCCAGCTATGCCAACGGCTCCATCTGGCAGGCGTCAACCACCGGCCTTGCCGTCGATCACAAAGCAC
GCAGCCGGGGCGACATCATCACCGTCCTGATCGTCGAGCAGGCGAGCGCCAGCAAAGAGGCCACCACCGACACCGAGCGC
AAGGCCGAGGTGTCGGCCAGCGTCCCCTATCTCATGGGGCTGGAAAAGAGCTCAACCCTTTTCAGCAAGCTGACCAACGC
CAATCCCAACAACCTGCTCGGGGCCAGCACCAACTCCAAGTACGAAGGGAGTGGCGCCACCACCCGCAAGGAAAACCTGC
TGGCAACCATGACGGCCAAGATTACCGATGTCCTTCCCAACGGCAACTTCCTGATCGAAGGCCGGCGTAACGTGAAGGTT
AACAACGAAGACCAGATCCTGGTGCTCCAGGGGACCATCCGCCCCCGGGACGTATCTCCGGACAACACCATCAGCTCGAC
CATGATCGCCGACGCGCGGATTTCCTACACCGGCAACGGCGTCATCAGCGACCGGCAGCGGCCGGGGTGGCTCATGAATA
TCCTGGATTATATCTGGCCCTTCTAG

Upstream 100 bases:

>100_bases
TTTTCGCCTTGACGGCGTCAGGTTGAGGGTTTGCTTGTCAGGACGAAAAATCTCGTTTTCTGACAGGGAGTGAGGAGATA
CGTCAGTGAAACGATTGGCC

Downstream 100 bases:

>100_bases
TGGAGGGAAACGCGCCTTTTCCGCAATCTCGGCGTTGGGCGTCGGAATTTCCTTGTGCGGCGTACCCCGGTACGCCTCCG
CGGAATTCCTAGCCCGCCTT

Product: flagellar L-ring protein FlgH

Products: NA

Alternate protein names: Basal body L-ring protein

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSIICLALAGCAVEKTEVRTPTFDEQLRPAPPSYANGSIWQASTTGLAVDHKARSRGDIITVLIVEQASASKEATTDTER
KAEVSASVPYLMGLEKSSTLFSKLTNANPNNLLGASTNSKYEGSGATTRKENLLATMTAKITDVLPNGNFLIEGRRNVKV
NNEDQILVLQGTIRPRDVSPDNTISSTMIADARISYTGNGVISDRQRPGWLMNILDYIWPF

Sequences:

>Translated_221_residues
MSIICLALAGCAVEKTEVRTPTFDEQLRPAPPSYANGSIWQASTTGLAVDHKARSRGDIITVLIVEQASASKEATTDTER
KAEVSASVPYLMGLEKSSTLFSKLTNANPNNLLGASTNSKYEGSGATTRKENLLATMTAKITDVLPNGNFLIEGRRNVKV
NNEDQILVLQGTIRPRDVSPDNTISSTMIADARISYTGNGVISDRQRPGWLMNILDYIWPF
>Mature_220_residues
SIICLALAGCAVEKTEVRTPTFDEQLRPAPPSYANGSIWQASTTGLAVDHKARSRGDIITVLIVEQASASKEATTDTERK
AEVSASVPYLMGLEKSSTLFSKLTNANPNNLLGASTNSKYEGSGATTRKENLLATMTAKITDVLPNGNFLIEGRRNVKVN
NEDQILVLQGTIRPRDVSPDNTISSTMIADARISYTGNGVISDRQRPGWLMNILDYIWPF

Specific function: Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation

COG id: COG2063

COG function: function code N; Flagellar basal body L-ring protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable). Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgH family

Homologues:

Organism=Escherichia coli, GI1787319, Length=230, Percent_Identity=31.304347826087, Blast_Score=100, Evalue=8e-23,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLGH_GEOSL (Q748F4)

Other databases:

- EMBL:   AE017180
- RefSeq:   NP_954090.1
- GeneID:   2685212
- GenomeReviews:   AE017180_GR
- KEGG:   gsu:GSU3048
- NMPDR:   fig|243231.1.peg.3028
- TIGR:   GSU3048
- HOGENOM:   HBG507455
- OMA:   SMASANE
- ProtClustDB:   CLSK829074
- BioCyc:   GSUL243231:GSU_3048-MONOMER
- HAMAP:   MF_00415
- InterPro:   IPR000527
- PRINTS:   PR01008

Pfam domain/function: PF02107 FlgH

EC number: NA

Molecular weight: Translated: 23991; Mature: 23860

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS51257 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIICLALAGCAVEKTEVRTPTFDEQLRPAPPSYANGSIWQASTTGLAVDHKARSRGDII
CEEEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCEE
TVLIVEQASASKEATTDTERKAEVSASVPYLMGLEKSSTLFSKLTNANPNNLLGASTNSK
EEEEEECCCCCCCCCCCCHHHHHHCCCCCCEEECCCHHHHHHHHHCCCCCCEEECCCCCC
YEGSGATTRKENLLATMTAKITDVLPNGNFLIEGRRNVKVNNEDQILVLQGTIRPRDVSP
CCCCCCCCHHHHEEEEEEHHHEEECCCCCEEEECCCCEEECCCCCEEEEECCCCCCCCCC
DNTISSTMIADARISYTGNGVISDRQRPGWLMNILDYIWPF
CCCCCCEEEECEEEEECCCCEECCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SIICLALAGCAVEKTEVRTPTFDEQLRPAPPSYANGSIWQASTTGLAVDHKARSRGDII
EEEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCEE
TVLIVEQASASKEATTDTERKAEVSASVPYLMGLEKSSTLFSKLTNANPNNLLGASTNSK
EEEEEECCCCCCCCCCCCHHHHHHCCCCCCEEECCCHHHHHHHHHCCCCCCEEECCCCCC
YEGSGATTRKENLLATMTAKITDVLPNGNFLIEGRRNVKVNNEDQILVLQGTIRPRDVSP
CCCCCCCCHHHHEEEEEEHHHEEECCCCCEEEECCCCEEECCCCCEEEEECCCCCCCCCC
DNTISSTMIADARISYTGNGVISDRQRPGWLMNILDYIWPF
CCCCCCEEEECEEEEECCCCEECCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA