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The map label for this gene is yvkB [H]

Identifier: 39997829

GI number: 39997829

Start: 3012258

End: 3012863

Strand: Reverse

Name: yvkB [H]

Synonym: GSU2735

Alternate gene names: 39997829

Gene position: 3012863-3012258 (Counterclockwise)

Preceding gene: 39997831

Following gene: 39997827

Centisome position: 78.99

GC content: 60.56

Gene sequence:

>606_bases
GTGACCCATGAGCGGATCCTCGAAACGGCCCTCGGTCTGTTCTCGACCAAGGGGTACCTGGGAGCCACGACCCGCGAGAT
CGCCCGACAGGCGGGCATCGCGGAGGTGACGCTCTTCCGCCATTTTCCCTCCAAAGAAAAACTTCTCGAAGAAGCGATCA
CCCGTTATTCCATTTTGCCGTCGCTGCGCGCCTTCGTGCCCCGGGCGCTCGCCATGCCCTACGAGGATGCGCTGGCGGCC
ATGGCGAACATCCTTTTGGACACGCTGATCCAGCTGAAGGACTGGCTTCGGATCATGCACGCGGAGGTCCAGCGCTCGCC
TGAGAAGCTGCTGGGGGTGTACCACACGTTTTTGGACGAGCTGTTCGAAGTGATCGCGTCCTATTTCCGTGAGCTGCAGC
AGCGGGGCAGCATCGGCAGTTTCGACCCCGAGCTTGGTGCGCGGGTGTTTCACGCCATGTTCTACTGTTTTTTCAATATC
GAAGAGGTACTGCTGCGCAAGCAGTACCGTCCCACGGACCGAGAGAAGGCCGTGCGGGAATTCGTCCGGATGTTTGTCCA
CGGCACGGGCGGTATCGGCCGTACGGACTATGCCAGGGCATCGTAA

Upstream 100 bases:

>100_bases
GTGAAGGTTGTGCGCAGGTCCCACTGATGGGACGACGGACAAGGAGGTTGCCTTGTCGTGCTCGGTTGTCAAAGGTGAAG
GCCCGTTCGATCCGTTTACC

Downstream 100 bases:

>100_bases
CCGCGCTGATCAGACGCGCCAAAAGTGATCAACGGTTGTGATAGGGACGGGAGACGGCCGAAGGAGGTGATGTCAGCAGC
CGCCGTGATCCTGCCGGAAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MTHERILETALGLFSTKGYLGATTREIARQAGIAEVTLFRHFPSKEKLLEEAITRYSILPSLRAFVPRALAMPYEDALAA
MANILLDTLIQLKDWLRIMHAEVQRSPEKLLGVYHTFLDELFEVIASYFRELQQRGSIGSFDPELGARVFHAMFYCFFNI
EEVLLRKQYRPTDREKAVREFVRMFVHGTGGIGRTDYARAS

Sequences:

>Translated_201_residues
MTHERILETALGLFSTKGYLGATTREIARQAGIAEVTLFRHFPSKEKLLEEAITRYSILPSLRAFVPRALAMPYEDALAA
MANILLDTLIQLKDWLRIMHAEVQRSPEKLLGVYHTFLDELFEVIASYFRELQQRGSIGSFDPELGARVFHAMFYCFFNI
EEVLLRKQYRPTDREKAVREFVRMFVHGTGGIGRTDYARAS
>Mature_200_residues
THERILETALGLFSTKGYLGATTREIARQAGIAEVTLFRHFPSKEKLLEEAITRYSILPSLRAFVPRALAMPYEDALAAM
ANILLDTLIQLKDWLRIMHAEVQRSPEKLLGVYHTFLDELFEVIASYFRELQQRGSIGSFDPELGARVFHAMFYCFFNIE
EVLLRKQYRPTDREKAVREFVRMFVHGTGGIGRTDYARAS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23123; Mature: 22992

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHERILETALGLFSTKGYLGATTREIARQAGIAEVTLFRHFPSKEKLLEEAITRYSILP
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SLRAFVPRALAMPYEDALAAMANILLDTLIQLKDWLRIMHAEVQRSPEKLLGVYHTFLDE
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
LFEVIASYFRELQQRGSIGSFDPELGARVFHAMFYCFFNIEEVLLRKQYRPTDREKAVRE
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
FVRMFVHGTGGIGRTDYARAS
HHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
THERILETALGLFSTKGYLGATTREIARQAGIAEVTLFRHFPSKEKLLEEAITRYSILP
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SLRAFVPRALAMPYEDALAAMANILLDTLIQLKDWLRIMHAEVQRSPEKLLGVYHTFLDE
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
LFEVIASYFRELQQRGSIGSFDPELGARVFHAMFYCFFNIEEVLLRKQYRPTDREKAVRE
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
FVRMFVHGTGGIGRTDYARAS
HHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]