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The map label for this gene is huP-1 [H]

Identifier: 39997696

GI number: 39997696

Start: 2869900

End: 2870190

Strand: Reverse

Name: huP-1 [H]

Synonym: GSU2602

Alternate gene names: 39997696

Gene position: 2870190-2869900 (Counterclockwise)

Preceding gene: 39997697

Following gene: 39997695

Centisome position: 75.25

GC content: 58.76

Gene sequence:

>291_bases
ATGACAAAAAGTGAACTGGTAGAAATGCTGGCGGAGAAAAACTCGTGGCTCACCCGCAAGGACTCGGAGATGGTGGTCAA
CATCGTATTCGACAGTATCGCCGACGCCCTCAAGAGTGGTGAGAAGGTCGAGATCCGCGGCTTCGGAAGCTTCACCGTCC
GTGAGCGCGGCGCCCGCGAGGCCCGCAACCCCAAGAGCGGCGCCATCGTCAAGATCCCCGCCAAGAAGACCCCGTTCTTC
AAGACCGGTAAGGAACTCCGCGAGCGAGTAAACCACGAGAACGCCGATTAG

Upstream 100 bases:

>100_bases
ACAACAACGACTAACATCCGTCCACCGGGCGGGCGCCGTCCGGTCCGCCGGGCGACGCCGGCACCGCGGCAGAGTCAATC
AAGCAGCAAGGAGTATTGTG

Downstream 100 bases:

>100_bases
ACCCGGTACTGCCCGGATGGTGGAACTGGTAGACACAAGGGATTTAAAATCCCTCGGCAGCAATGCTGTGCCGGTTCGAG
CCCGGCTCCGGGCACCACGT

Product: DNA-binding protein HU

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 96; Mature: 95

Protein sequence:

>96_residues
MTKSELVEMLAEKNSWLTRKDSEMVVNIVFDSIADALKSGEKVEIRGFGSFTVRERGAREARNPKSGAIVKIPAKKTPFF
KTGKELRERVNHENAD

Sequences:

>Translated_96_residues
MTKSELVEMLAEKNSWLTRKDSEMVVNIVFDSIADALKSGEKVEIRGFGSFTVRERGAREARNPKSGAIVKIPAKKTPFF
KTGKELRERVNHENAD
>Mature_95_residues
TKSELVEMLAEKNSWLTRKDSEMVVNIVFDSIADALKSGEKVEIRGFGSFTVRERGAREARNPKSGAIVKIPAKKTPFFK
TGKELRERVNHENAD

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=48.3516483516484, Blast_Score=89, Evalue=4e-20,
Organism=Escherichia coli, GI1788005, Length=95, Percent_Identity=38.9473684210526, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=36.2637362637363, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=35.5555555555556, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10824; Mature: 10692

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELVEMLAEKNSWLTRKDSEMVVNIVFDSIADALKSGEKVEIRGFGSFTVRERGARE
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCHH
ARNPKSGAIVKIPAKKTPFFKTGKELRERVNHENAD
CCCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
TKSELVEMLAEKNSWLTRKDSEMVVNIVFDSIADALKSGEKVEIRGFGSFTVRERGARE
CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCHH
ARNPKSGAIVKIPAKKTPFFKTGKELRERVNHENAD
CCCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA