Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 39997639

GI number: 39997639

Start: 2806908

End: 2807603

Strand: Reverse

Name: yggS [C]

Synonym: GSU2544

Alternate gene names: 39997639

Gene position: 2807603-2806908 (Counterclockwise)

Preceding gene: 39997640

Following gene: 39997638

Centisome position: 73.61

GC content: 65.37

Gene sequence:

>696_bases
ATGGCAATCGCCGACAATTTGACCCATATCCTGGCAAAGATCGCGGCCGCGGCCCGGCGGGCCGGGCGTGATCCGGCGTC
GGTGCGCCTCGTTGCGGTCTCCAAGACCATTCCGGCCGAGGCGGTTGAGGACGCGGCCCGGGCAGGGCAGCGGCTCTTCG
GCGAGAACTACGTGCAGGAATTCACGGCCAAGGCCCGTGAGGTGCGTGATCCGGTGGAGTGGCATTTCATCGGTCACCTT
CAATCCAACAAGGTCAAGTACCTGGCCGGGCTCGTGACCTGTATCCATTCGGTGGACCGTCTGTCCCTGGCCGAGGAGAT
CGACCGCCAGTGGGCAAAGCTCGACGCGGTCTGCGACATCCTCGTGCAGGTGAACATCGCAGACGAGGAGACCAAGAGCG
GCACCTCGGCGTCCGAACTCACAGACCTGGTGGCGGCCATGGCCACCCTGCCCCACGTGCGGGTCCGGGGTCTCATGACC
ATGCCTCCCTTCTTCGACGACCCCGAGGAGGCCCGTCCCTACTTCCGCGAGCTCAGGCGCCTGGCCGACGCGGTGGCTGC
CGAGAACATTCCCGGTATTTCCATGACGGAACTCTCCATGGGGATGTCCGGTGACTTCGAGGCTGCCGTGGAGGAGGGGG
CTACGCTGGTCCGCATCGGAACGGCCCTGTTCGGCGAACGGGTGTATCGTCCCTGA

Upstream 100 bases:

>100_bases
GGTCGAGCGGATCGACGGCTCCTATACCAATGTGGTTGGCCTGCCGCTCTGCGAAGTGGTGGAGGATCTGCGCCGCATCG
GCGCCCTGTGAGTTCCGGTC

Downstream 100 bases:

>100_bases
CCAAGTCACCCGTCACTACCCCTGTGGCGGTCTTCGGGCCGTAATTCCCGTAGTTATTTCCTTAGTGGAGGTTGTAGCGC
AAATGCTGTTCCGCCTGATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MAIADNLTHILAKIAAAARRAGRDPASVRLVAVSKTIPAEAVEDAARAGQRLFGENYVQEFTAKAREVRDPVEWHFIGHL
QSNKVKYLAGLVTCIHSVDRLSLAEEIDRQWAKLDAVCDILVQVNIADEETKSGTSASELTDLVAAMATLPHVRVRGLMT
MPPFFDDPEEARPYFRELRRLADAVAAENIPGISMTELSMGMSGDFEAAVEEGATLVRIGTALFGERVYRP

Sequences:

>Translated_231_residues
MAIADNLTHILAKIAAAARRAGRDPASVRLVAVSKTIPAEAVEDAARAGQRLFGENYVQEFTAKAREVRDPVEWHFIGHL
QSNKVKYLAGLVTCIHSVDRLSLAEEIDRQWAKLDAVCDILVQVNIADEETKSGTSASELTDLVAAMATLPHVRVRGLMT
MPPFFDDPEEARPYFRELRRLADAVAAENIPGISMTELSMGMSGDFEAAVEEGATLVRIGTALFGERVYRP
>Mature_230_residues
AIADNLTHILAKIAAAARRAGRDPASVRLVAVSKTIPAEAVEDAARAGQRLFGENYVQEFTAKAREVRDPVEWHFIGHLQ
SNKVKYLAGLVTCIHSVDRLSLAEEIDRQWAKLDAVCDILVQVNIADEETKSGTSASELTDLVAAMATLPHVRVRGLMTM
PPFFDDPEEARPYFRELRRLADAVAAENIPGISMTELSMGMSGDFEAAVEEGATLVRIGTALFGERVYRP

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=227, Percent_Identity=41.4096916299559, Blast_Score=144, Evalue=7e-35,
Organism=Escherichia coli, GI1789321, Length=234, Percent_Identity=45.7264957264957, Blast_Score=184, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI17533025, Length=240, Percent_Identity=35, Blast_Score=124, Evalue=5e-29,
Organism=Saccharomyces cerevisiae, GI6319435, Length=219, Percent_Identity=34.2465753424658, Blast_Score=117, Evalue=1e-27,
Organism=Drosophila melanogaster, GI45550861, Length=236, Percent_Identity=36.864406779661, Blast_Score=142, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25276; Mature: 25145

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIADNLTHILAKIAAAARRAGRDPASVRLVAVSKTIPAEAVEDAARAGQRLFGENYVQE
CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
FTAKAREVRDPVEWHFIGHLQSNKVKYLAGLVTCIHSVDRLSLAEEIDRQWAKLDAVCDI
HHHHHHHHCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVQVNIADEETKSGTSASELTDLVAAMATLPHVRVRGLMTMPPFFDDPEEARPYFRELRR
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
LADAVAAENIPGISMTELSMGMSGDFEAAVEEGATLVRIGTALFGERVYRP
HHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AIADNLTHILAKIAAAARRAGRDPASVRLVAVSKTIPAEAVEDAARAGQRLFGENYVQE
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
FTAKAREVRDPVEWHFIGHLQSNKVKYLAGLVTCIHSVDRLSLAEEIDRQWAKLDAVCDI
HHHHHHHHCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVQVNIADEETKSGTSASELTDLVAAMATLPHVRVRGLMTMPPFFDDPEEARPYFRELRR
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
LADAVAAENIPGISMTELSMGMSGDFEAAVEEGATLVRIGTALFGERVYRP
HHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]