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The map label for this gene is (hspc4-1 [H]

Identifier: 39997505

GI number: 39997505

Start: 2643517

End: 2643966

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: GSU2410

Alternate gene names: 39997505

Gene position: 2643966-2643517 (Counterclockwise)

Preceding gene: 39997521

Following gene: 39997504

Centisome position: 69.32

GC content: 55.11

Gene sequence:

>450_bases
ATGGCAACCTGGGATGTATTCAAAGAGTTGGACAATCTGAGAAGGGAAATCGATGAAGCGTTCCGCGGTGCAGGCTTTGG
CCGGCCGTTTGGACCGACATTCCTTTCGCCGGTTACATCCCGCCGTTTCCCGCTGGTCAACTTCAGCGAGGATGAGGGCT
ACATTTACATTGAGGCTCTGGTCCCCGGCGTCGATCCGAAGGATGTTGACCTGTCCGTGCTGCGGAATACGGTCACCATC
AGCGGGGAACGCAAACCGTTCGTCCAAAGCGAAGGGCAGATCGTGCACCGTTCGGAACTTGGTTCCGGTAAATTCTCACG
GACCCTGGAGCTGCCGACCGACATCGATCCCGGTAAGATCACGGCCCAGTGCAAGGACGGGATTTTGAGGATCGCGTTGG
CTAAGGCTGAACATGCCAAACCAAAGAAAATCGAGATCAAACTTTCGTGA

Upstream 100 bases:

>100_bases
AACCGGCAACCTCTGTCCGGTTCTGCCCCACTCTTGACACCTAAGGGGTGCGTAATTATTTTTTTATCGAAAGATCACCC
ATCGAAAGGAGGTAATCCAC

Downstream 100 bases:

>100_bases
CGCTTTGAAGGTTCTCGCGGAAAGGAGGTAATCAATCATGGCAGTCAACAGCTTGACGGAAAGAAATGAAGAACGGAATG
TACAGCCCCGTGAAGAGACA

Product: HSP20 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MATWDVFKELDNLRREIDEAFRGAGFGRPFGPTFLSPVTSRRFPLVNFSEDEGYIYIEALVPGVDPKDVDLSVLRNTVTI
SGERKPFVQSEGQIVHRSELGSGKFSRTLELPTDIDPGKITAQCKDGILRIALAKAEHAKPKKIEIKLS

Sequences:

>Translated_149_residues
MATWDVFKELDNLRREIDEAFRGAGFGRPFGPTFLSPVTSRRFPLVNFSEDEGYIYIEALVPGVDPKDVDLSVLRNTVTI
SGERKPFVQSEGQIVHRSELGSGKFSRTLELPTDIDPGKITAQCKDGILRIALAKAEHAKPKKIEIKLS
>Mature_148_residues
ATWDVFKELDNLRREIDEAFRGAGFGRPFGPTFLSPVTSRRFPLVNFSEDEGYIYIEALVPGVDPKDVDLSVLRNTVTIS
GERKPFVQSEGQIVHRSELGSGKFSRTLELPTDIDPGKITAQCKDGILRIALAKAEHAKPKKIEIKLS

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 16601; Mature: 16470

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATWDVFKELDNLRREIDEAFRGAGFGRPFGPTFLSPVTSRRFPLVNFSEDEGYIYIEAL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCEEEEEEE
VPGVDPKDVDLSVLRNTVTISGERKPFVQSEGQIVHRSELGSGKFSRTLELPTDIDPGKI
ECCCCCCCCCHHHEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCEE
TAQCKDGILRIALAKAEHAKPKKIEIKLS
EECCCCCEEEEEEECCCCCCCCEEEEEEC
>Mature Secondary Structure 
ATWDVFKELDNLRREIDEAFRGAGFGRPFGPTFLSPVTSRRFPLVNFSEDEGYIYIEAL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCEEEEEEE
VPGVDPKDVDLSVLRNTVTISGERKPFVQSEGQIVHRSELGSGKFSRTLELPTDIDPGKI
ECCCCCCCCCHHHEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCEE
TAQCKDGILRIALAKAEHAKPKKIEIKLS
EECCCCCEEEEEEECCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA