| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is cbpA [H]
Identifier: 39997501
GI number: 39997501
Start: 2641113
End: 2642054
Strand: Reverse
Name: cbpA [H]
Synonym: GSU2406
Alternate gene names: 39997501
Gene position: 2642054-2641113 (Counterclockwise)
Preceding gene: 39997502
Following gene: 39997500
Centisome position: 69.27
GC content: 60.93
Gene sequence:
>942_bases ATGGCTAAGTATCAGGACTATTACGCCATTCTCGGCGTAAGCAAAACTGCAACCCAAGAGGAGGTACAGCGGGCCTACCG TAAGCTGGCCCGCAAGTACCACCCCGATATCAATAAGGCCGGCGATGCCGAAGAGAAATTCAAGCAGATCAACGAGGCTT ACGAGGTGCTCAGTGACCCGGACAAACGGGCTACGTACGATCAGCTCGGCCGCGATTGGGATGGACGGCACGGCACTCAG GGCTATCAGGGAGGCGACAACGCCGGACATCATTTCTCCACTGCCGATCCGGGCCAGTTCAGTGACTTCTTTCAGGACCT GTTCGGCAGCGGGTGGAACTTTGGTGGATCGGCTGAATTCCAGGGGGGAGGCACCAGGAGAAGGCGAGGCCGCGACCATG AGGCCACCATCACCATCACGCTTGCTGAGGCCTATCATGGCGCCAGGAAAAGCATTGAACTGGAACGGGCGGAGGCGGAC AGCGCCGGCAGGCTGGCCAGGACGAGGCGCACCTATGATGTTGCCATCCCGCCAGGGGTGACCGACGGCTCGCTGATCCG GCTTGCCGGGCAGGGAGGGCGTGGCACGGGAGGTGGTGAAGCCGGCGACCTTTTCCTGCGGGTCAGCATTCTCCCTGACA GCCGCTTCACCCTGAACGGCAACGACCTGACTACCATGGTCGATGTCACCCCGTGGGAAGCCGCGTTAGGTGCCAAGGTG CCGGTACCGACGGTAGACGGCAGGATCAATCTCACCGTGCCGGCCGGAACCCAGAGCGGCCAGATCTTGCGCGTTCGCGG CAAGGGAATGCCGATTGCTTCGGGCCGCCACGGAGATTTGCTGGTGAGTGTGCGTATCGTGGTGCCGAAGCACCTCTCAG ACAGAGAACGGCATCTCTTCGAGGAATTGGCCAAAGAATCGCGATTCGATCCGCGTATGTGA
Upstream 100 bases:
>100_bases GGATACAATTCCGTACAATGTTGAACAATGCATTTACTGCATGCGCAGATGGCCGGAAGATGAAAAGAAAGAGTGCTAGG TACCGGCGAGAGAGAAGATC
Downstream 100 bases:
>100_bases CCGAGGACCGCTATGACAGCTCAACAGTATGAAATCATAATCAGCAGAAAACATGAACTGGTCTCCGTGCCGGGCATTAC CCTCCATGAGCTGAGCAGGC
Product: molecular chaperone DnaJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MAKYQDYYAILGVSKTATQEEVQRAYRKLARKYHPDINKAGDAEEKFKQINEAYEVLSDPDKRATYDQLGRDWDGRHGTQ GYQGGDNAGHHFSTADPGQFSDFFQDLFGSGWNFGGSAEFQGGGTRRRRGRDHEATITITLAEAYHGARKSIELERAEAD SAGRLARTRRTYDVAIPPGVTDGSLIRLAGQGGRGTGGGEAGDLFLRVSILPDSRFTLNGNDLTTMVDVTPWEAALGAKV PVPTVDGRINLTVPAGTQSGQILRVRGKGMPIASGRHGDLLVSVRIVVPKHLSDRERHLFEELAKESRFDPRM
Sequences:
>Translated_313_residues MAKYQDYYAILGVSKTATQEEVQRAYRKLARKYHPDINKAGDAEEKFKQINEAYEVLSDPDKRATYDQLGRDWDGRHGTQ GYQGGDNAGHHFSTADPGQFSDFFQDLFGSGWNFGGSAEFQGGGTRRRRGRDHEATITITLAEAYHGARKSIELERAEAD SAGRLARTRRTYDVAIPPGVTDGSLIRLAGQGGRGTGGGEAGDLFLRVSILPDSRFTLNGNDLTTMVDVTPWEAALGAKV PVPTVDGRINLTVPAGTQSGQILRVRGKGMPIASGRHGDLLVSVRIVVPKHLSDRERHLFEELAKESRFDPRM >Mature_312_residues AKYQDYYAILGVSKTATQEEVQRAYRKLARKYHPDINKAGDAEEKFKQINEAYEVLSDPDKRATYDQLGRDWDGRHGTQG YQGGDNAGHHFSTADPGQFSDFFQDLFGSGWNFGGSAEFQGGGTRRRRGRDHEATITITLAEAYHGARKSIELERAEADS AGRLARTRRTYDVAIPPGVTDGSLIRLAGQGGRGTGGGEAGDLFLRVSILPDSRFTLNGNDLTTMVDVTPWEAALGAKVP VPTVDGRINLTVPAGTQSGQILRVRGKGMPIASGRHGDLLVSVRIVVPKHLSDRERHLFEELAKESRFDPRM
Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt
COG id: COG2214
COG function: function code O; DnaJ-class molecular chaperone
Gene ontology:
Cell location: Cytoplasm, nucleoid [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI201862518, Length=345, Percent_Identity=30.7246376811594, Blast_Score=140, Evalue=2e-33, Organism=Homo sapiens, GI201862587, Length=345, Percent_Identity=30.7246376811594, Blast_Score=140, Evalue=2e-33, Organism=Homo sapiens, GI56549115, Length=345, Percent_Identity=30.7246376811594, Blast_Score=139, Evalue=3e-33, Organism=Homo sapiens, GI6631085, Length=331, Percent_Identity=29.0030211480363, Blast_Score=128, Evalue=7e-30, Organism=Homo sapiens, GI5453690, Length=336, Percent_Identity=29.7619047619048, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI205360838, Length=360, Percent_Identity=28.6111111111111, Blast_Score=122, Evalue=3e-28, Organism=Homo sapiens, GI205360840, Length=360, Percent_Identity=28.6111111111111, Blast_Score=122, Evalue=4e-28, Organism=Homo sapiens, GI39204547, Length=318, Percent_Identity=27.9874213836478, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI7706495, Length=345, Percent_Identity=26.6666666666667, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI194328758, Length=158, Percent_Identity=39.873417721519, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI194328760, Length=158, Percent_Identity=39.873417721519, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI4504511, Length=156, Percent_Identity=39.1025641025641, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI9558755, Length=142, Percent_Identity=40.1408450704225, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI194306642, Length=128, Percent_Identity=41.40625, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI194306640, Length=128, Percent_Identity=41.40625, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI47777312, Length=151, Percent_Identity=37.0860927152318, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI56687498, Length=65, Percent_Identity=56.9230769230769, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI72534740, Length=125, Percent_Identity=37.6, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI23503241, Length=108, Percent_Identity=41.6666666666667, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI22749377, Length=70, Percent_Identity=54.2857142857143, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI17388799, Length=65, Percent_Identity=56.9230769230769, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4885495, Length=65, Percent_Identity=56.9230769230769, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI27151736, Length=132, Percent_Identity=37.8787878787879, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI21553335, Length=110, Percent_Identity=40, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI88501736, Length=132, Percent_Identity=37.8787878787879, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI24308127, Length=99, Percent_Identity=42.4242424242424, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI5031741, Length=64, Percent_Identity=57.8125, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI68077168, Length=63, Percent_Identity=55.5555555555556, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI68077166, Length=63, Percent_Identity=55.5555555555556, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI217035105, Length=71, Percent_Identity=45.0704225352113, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI45504382, Length=64, Percent_Identity=48.4375, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI29126218, Length=64, Percent_Identity=51.5625, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787235, Length=315, Percent_Identity=40, Blast_Score=215, Evalue=3e-57, Organism=Escherichia coli, GI1786197, Length=361, Percent_Identity=36.01108033241, Blast_Score=159, Evalue=2e-40, Organism=Caenorhabditis elegans, GI17534355, Length=334, Percent_Identity=31.437125748503, Blast_Score=129, Evalue=1e-30, Organism=Caenorhabditis elegans, GI212645553, Length=344, Percent_Identity=27.906976744186, Blast_Score=98, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17553096, Length=63, Percent_Identity=53.968253968254, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17553098, Length=63, Percent_Identity=53.968253968254, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17568643, Length=65, Percent_Identity=55.3846153846154, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17507263, Length=68, Percent_Identity=54.4117647058823, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17554644, Length=66, Percent_Identity=54.5454545454545, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17538236, Length=114, Percent_Identity=37.719298245614, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115532476, Length=70, Percent_Identity=44.2857142857143, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115532378, Length=151, Percent_Identity=33.112582781457, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17554900, Length=65, Percent_Identity=44.6153846153846, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324265, Length=159, Percent_Identity=38.3647798742138, Blast_Score=91, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6323870, Length=69, Percent_Identity=55.0724637681159, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6323813, Length=126, Percent_Identity=41.2698412698413, Blast_Score=83, Evalue=6e-17, Organism=Saccharomyces cerevisiae, GI6321094, Length=147, Percent_Identity=34.0136054421769, Blast_Score=77, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6323119, Length=156, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6322388, Length=69, Percent_Identity=52.1739130434783, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6320888, Length=110, Percent_Identity=39.0909090909091, Blast_Score=69, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6322194, Length=89, Percent_Identity=43.8202247191011, Blast_Score=66, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6322299, Length=88, Percent_Identity=42.0454545454545, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324103, Length=63, Percent_Identity=52.3809523809524, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI85726398, Length=349, Percent_Identity=30.945558739255, Blast_Score=147, Evalue=1e-35, Organism=Drosophila melanogaster, GI24658562, Length=338, Percent_Identity=30.7692307692308, Blast_Score=132, Evalue=4e-31, Organism=Drosophila melanogaster, GI24658555, Length=338, Percent_Identity=30.7692307692308, Blast_Score=132, Evalue=4e-31, Organism=Drosophila melanogaster, GI19920464, Length=332, Percent_Identity=29.2168674698795, Blast_Score=121, Evalue=5e-28, Organism=Drosophila melanogaster, GI18858081, Length=335, Percent_Identity=29.5522388059701, Blast_Score=115, Evalue=5e-26, Organism=Drosophila melanogaster, GI24654066, Length=112, Percent_Identity=48.2142857142857, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24654070, Length=112, Percent_Identity=48.2142857142857, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24654068, Length=112, Percent_Identity=48.2142857142857, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24654072, Length=112, Percent_Identity=48.2142857142857, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI20129487, Length=349, Percent_Identity=29.2263610315186, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI24584014, Length=349, Percent_Identity=29.2263610315186, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI45549272, Length=152, Percent_Identity=36.8421052631579, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI45552813, Length=152, Percent_Identity=36.8421052631579, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI45552811, Length=152, Percent_Identity=36.8421052631579, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24646562, Length=70, Percent_Identity=58.5714285714286, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI24646560, Length=70, Percent_Identity=58.5714285714286, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI24646558, Length=70, Percent_Identity=58.5714285714286, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI24646556, Length=70, Percent_Identity=58.5714285714286, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI21357547, Length=70, Percent_Identity=58.5714285714286, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI24668492, Length=93, Percent_Identity=39.7849462365591, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24641698, Length=85, Percent_Identity=45.8823529411765, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24641696, Length=85, Percent_Identity=45.8823529411765, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=56.25, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21358273, Length=66, Percent_Identity=54.5454545454545, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24668523, Length=64, Percent_Identity=53.125, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI17737735, Length=64, Percent_Identity=53.125, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI28574723, Length=64, Percent_Identity=53.125, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI21355911, Length=102, Percent_Identity=40.1960784313725, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI17648033, Length=127, Percent_Identity=35.4330708661417, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24584630, Length=127, Percent_Identity=35.4330708661417, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24643995, Length=66, Percent_Identity=43.9393939393939, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21357687, Length=71, Percent_Identity=42.2535211267606, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]
EC number: NA
Molecular weight: Translated: 34360; Mature: 34228
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKYQDYYAILGVSKTATQEEVQRAYRKLARKYHPDINKAGDAEEKFKQINEAYEVLSDP CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC DKRATYDQLGRDWDGRHGTQGYQGGDNAGHHFSTADPGQFSDFFQDLFGSGWNFGGSAEF CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEE QGGGTRRRRGRDHEATITITLAEAYHGARKSIELERAEADSAGRLARTRRTYDVAIPPGV CCCCCHHHCCCCCCEEEEEEEHHHHCCHHHCEEEHHHCCCCCHHHHHHCCEEEEECCCCC TDGSLIRLAGQGGRGTGGGEAGDLFLRVSILPDSRFTLNGNDLTTMVDVTPWEAALGAKV CCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCEEEEEECCCHHHHHCCCC PVPTVDGRINLTVPAGTQSGQILRVRGKGMPIASGRHGDLLVSVRIVVPKHLSDRERHLF CCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHH EELAKESRFDPRM HHHHHHCCCCCCC >Mature Secondary Structure AKYQDYYAILGVSKTATQEEVQRAYRKLARKYHPDINKAGDAEEKFKQINEAYEVLSDP CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC DKRATYDQLGRDWDGRHGTQGYQGGDNAGHHFSTADPGQFSDFFQDLFGSGWNFGGSAEF CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEE QGGGTRRRRGRDHEATITITLAEAYHGARKSIELERAEADSAGRLARTRRTYDVAIPPGV CCCCCHHHCCCCCCEEEEEEEHHHHCCHHHCEEEHHHCCCCCHHHHHHCCEEEEECCCCC TDGSLIRLAGQGGRGTGGGEAGDLFLRVSILPDSRFTLNGNDLTTMVDVTPWEAALGAKV CCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCEEEEEECCCHHHHHCCCC PVPTVDGRINLTVPAGTQSGQILRVRGKGMPIASGRHGDLLVSVRIVVPKHLSDRERHLF CCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHH EELAKESRFDPRM HHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA