Click here to switch to the map view.

The map label for this gene is 39997442

Identifier: 39997442

GI number: 39997442

Start: 2564390

End: 2565973

Strand: Reverse

Name: 39997442

Synonym: GSU2346

Alternate gene names: NA

Gene position: 2565973-2564390 (Counterclockwise)

Preceding gene: 39997445

Following gene: 39997441

Centisome position: 67.28

GC content: 63.83

Gene sequence:

>1584_bases
GTGCCGAACGCCTACATCCGCTACAGGATAAAACGCCTGCGCGAGTATATTGCAGAGCGCACTGCCGGGATCGACCACCG
GGCCATCATCAAGAACGCCGTGGCAGGGGCCGAGCTGTCCGGCAGCTACGTGTCCCTGCTGCTCCTGGCGAGCCTCATAG
CCTTGCTCGGGCTGCTGACCAACAGTGTGGCCGTGGTCATCGGGGCCATGCTCATCTCTCCGCTCATGGGCCCGATCCTC
TCCTTCGGCCTCGCCTTCACCATCGGGGACCTGGCCCTGGCCAGGCGGGGGCTCCGGGTCATAGCGGTGAGCGTTGGGCT
CACCATTGCGCTGACCGCCTTCGTGACGCTCCTGTCCCCCCTCAAGGAACCGACGACCGAGATCCTGAGTCGGGTCCGCC
CAAACGTCTACGACCTTTTCGTGGCGGTTCTGGCCGGCACCGCCGGGGCCATTGCCCTCTGTACCAAGAAGAATTACATG
ATCACTGCGACCGGGGTTGCCGTGGCCACCGCGGTCATTCCCCCGTTGTCGGTCGTGGGCTTTGGCCTGGGCAGCGGGCA
TCCCATGCTGGGGCTGGGCGGGTTTCTCCTGTTTTTCACCAACTTCGTGGCCATTGTCCTGACGGCCGATCTGGTGTTTT
TCCTCTTCAACTTCCGCAGTTCCATGGTCTCCGAGGAAACGTACCCGGCCCGAAAGAGGCTTCTGATCCTCGGAACCGTG
CTCGCGCTGTTGTCCATCCCGCTCGTTCACACCCTGGTGACGGATCTGCGCAAGGTTAAACTCACCAAACGGGTGGAACG
GGTGCTGAAGCTGCATCTCGAGAAGGAAGCCCATTCCAGGGTGACCGGATTTTCGGTTCAGGAGAAGGATGGCCGGGTTG
GCGTGAACGTGACGGTCAATACGGTCAGGCCCTTTGAGAAGAAGGCAGAGGAGGAGATCGAGAAGGAGATCGGTTCATTC
CTCGGGCGGAACGTCGAGTTGAACCTGGAACAGGTGGTGGTGACGGCCGGTTCCATCGAACCGAGGGCCGAGCTGTCGGC
CGTATCTCCGGTGGGGCAGCCCGCGTCTGCCAGGGACGAGAGCGCGGCAGCGGTTCAGGCATCCGCATCCCGCCTGCTGA
GGGACGTGCGGACCGAACTGGAGGCGCTGACGTCACCCTTTGCCGTGGAGGACATCGGTCTGGGCTTTGGCGAAAAACCG
GGGCCGGCCCGGGTGTCCGTGGTTCTCCGCCGCGACTACCCCCTCACTGACGACGAGCGGCTGCTGCTTGCCCGGCTCCT
GGAACGCAGGCTTCAGGTGCCGGTGTCCCTCCGGGTAGAACTGGCGCCGTTCCTTCCTCGGGTCATTTTTGACGAAAAGG
GAGACCTCTCCCAGGAGAGCGTGGCGGCGATGGCATTGATCAAGAACCTGCCCGGCGGCCCCGGAGCTTTTTCATTCAGG
GTTGAGGCCGGGGGGAAGGACAGCCGGCGGCATGCCGACCGACTGAAGCGCTACCTGCAGGAGGAACTCGGTGTGCCGGC
CGCCAATGTGACGGCTGCGGTCCGGCCCGGCACGGGCGCATCGGTTTTGGTGGTGCGACGGTAG

Upstream 100 bases:

>100_bases
CTGAGGTGGACTCCGGCCCGCCGGTTGTGGTGAGGGGGAATTGCTGTTACTGTTAACGGATACTGAAACACGCTGCCTGA
TACGGCAGCAGAGGAGCACC

Downstream 100 bases:

>100_bases
CGGCCCGCGGCGGTCCGCGTGGGAGACTCACACGGCAACGGAAAAGGGAGGGGATGCATGTCTGAACCGGCCAACGCGGC
AGGGAACGGAGTGGCCCTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 527; Mature: 526

Protein sequence:

>527_residues
MPNAYIRYRIKRLREYIAERTAGIDHRAIIKNAVAGAELSGSYVSLLLLASLIALLGLLTNSVAVVIGAMLISPLMGPIL
SFGLAFTIGDLALARRGLRVIAVSVGLTIALTAFVTLLSPLKEPTTEILSRVRPNVYDLFVAVLAGTAGAIALCTKKNYM
ITATGVAVATAVIPPLSVVGFGLGSGHPMLGLGGFLLFFTNFVAIVLTADLVFFLFNFRSSMVSEETYPARKRLLILGTV
LALLSIPLVHTLVTDLRKVKLTKRVERVLKLHLEKEAHSRVTGFSVQEKDGRVGVNVTVNTVRPFEKKAEEEIEKEIGSF
LGRNVELNLEQVVVTAGSIEPRAELSAVSPVGQPASARDESAAAVQASASRLLRDVRTELEALTSPFAVEDIGLGFGEKP
GPARVSVVLRRDYPLTDDERLLLARLLERRLQVPVSLRVELAPFLPRVIFDEKGDLSQESVAAMALIKNLPGGPGAFSFR
VEAGGKDSRRHADRLKRYLQEELGVPAANVTAAVRPGTGASVLVVRR

Sequences:

>Translated_527_residues
MPNAYIRYRIKRLREYIAERTAGIDHRAIIKNAVAGAELSGSYVSLLLLASLIALLGLLTNSVAVVIGAMLISPLMGPIL
SFGLAFTIGDLALARRGLRVIAVSVGLTIALTAFVTLLSPLKEPTTEILSRVRPNVYDLFVAVLAGTAGAIALCTKKNYM
ITATGVAVATAVIPPLSVVGFGLGSGHPMLGLGGFLLFFTNFVAIVLTADLVFFLFNFRSSMVSEETYPARKRLLILGTV
LALLSIPLVHTLVTDLRKVKLTKRVERVLKLHLEKEAHSRVTGFSVQEKDGRVGVNVTVNTVRPFEKKAEEEIEKEIGSF
LGRNVELNLEQVVVTAGSIEPRAELSAVSPVGQPASARDESAAAVQASASRLLRDVRTELEALTSPFAVEDIGLGFGEKP
GPARVSVVLRRDYPLTDDERLLLARLLERRLQVPVSLRVELAPFLPRVIFDEKGDLSQESVAAMALIKNLPGGPGAFSFR
VEAGGKDSRRHADRLKRYLQEELGVPAANVTAAVRPGTGASVLVVRR
>Mature_526_residues
PNAYIRYRIKRLREYIAERTAGIDHRAIIKNAVAGAELSGSYVSLLLLASLIALLGLLTNSVAVVIGAMLISPLMGPILS
FGLAFTIGDLALARRGLRVIAVSVGLTIALTAFVTLLSPLKEPTTEILSRVRPNVYDLFVAVLAGTAGAIALCTKKNYMI
TATGVAVATAVIPPLSVVGFGLGSGHPMLGLGGFLLFFTNFVAIVLTADLVFFLFNFRSSMVSEETYPARKRLLILGTVL
ALLSIPLVHTLVTDLRKVKLTKRVERVLKLHLEKEAHSRVTGFSVQEKDGRVGVNVTVNTVRPFEKKAEEEIEKEIGSFL
GRNVELNLEQVVVTAGSIEPRAELSAVSPVGQPASARDESAAAVQASASRLLRDVRTELEALTSPFAVEDIGLGFGEKPG
PARVSVVLRRDYPLTDDERLLLARLLERRLQVPVSLRVELAPFLPRVIFDEKGDLSQESVAAMALIKNLPGGPGAFSFRV
EAGGKDSRRHADRLKRYLQEELGVPAANVTAAVRPGTGASVLVVRR

Specific function: Unknown

COG id: COG1808

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005233
- InterPro:   IPR013031
- InterPro:   IPR005240 [H]

Pfam domain/function: PF04087 DUF389 [H]

EC number: NA

Molecular weight: Translated: 56731; Mature: 56600

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNAYIRYRIKRLREYIAERTAGIDHRAIIKNAVAGAELSGSYVSLLLLASLIALLGLLT
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
NSVAVVIGAMLISPLMGPILSFGLAFTIGDLALARRGLRVIAVSVGLTIALTAFVTLLSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHH
LKEPTTEILSRVRPNVYDLFVAVLAGTAGAIALCTKKNYMITATGVAVATAVIPPLSVVG
HCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEHHHHHHHHHHCCHHHHH
FGLGSGHPMLGLGGFLLFFTNFVAIVLTADLVFFLFNFRSSMVSEETYPARKRLLILGTV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LALLSIPLVHTLVTDLRKVKLTKRVERVLKLHLEKEAHSRVTGFSVQEKDGRVGVNVTVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEEEE
TVRPFEKKAEEEIEKEIGSFLGRNVELNLEQVVVTAGSIEPRAELSAVSPVGQPASARDE
CCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHEEEECCCCCCCHHHHHCCCCCCCCCCCCC
SAAAVQASASRLLRDVRTELEALTSPFAVEDIGLGFGEKPGPARVSVVLRRDYPLTDDER
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCCHH
LLLARLLERRLQVPVSLRVELAPFLPRVIFDEKGDLSQESVAAMALIKNLPGGPGAFSFR
HHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
VEAGGKDSRRHADRLKRYLQEELGVPAANVTAAVRPGTGASVLVVRR
EECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEC
>Mature Secondary Structure 
PNAYIRYRIKRLREYIAERTAGIDHRAIIKNAVAGAELSGSYVSLLLLASLIALLGLLT
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
NSVAVVIGAMLISPLMGPILSFGLAFTIGDLALARRGLRVIAVSVGLTIALTAFVTLLSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHH
LKEPTTEILSRVRPNVYDLFVAVLAGTAGAIALCTKKNYMITATGVAVATAVIPPLSVVG
HCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEHHHHHHHHHHCCHHHHH
FGLGSGHPMLGLGGFLLFFTNFVAIVLTADLVFFLFNFRSSMVSEETYPARKRLLILGTV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LALLSIPLVHTLVTDLRKVKLTKRVERVLKLHLEKEAHSRVTGFSVQEKDGRVGVNVTVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEEEE
TVRPFEKKAEEEIEKEIGSFLGRNVELNLEQVVVTAGSIEPRAELSAVSPVGQPASARDE
CCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHEEEECCCCCCCHHHHHCCCCCCCCCCCCC
SAAAVQASASRLLRDVRTELEALTSPFAVEDIGLGFGEKPGPARVSVVLRRDYPLTDDER
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCCHH
LLLARLLERRLQVPVSLRVELAPFLPRVIFDEKGDLSQESVAAMALIKNLPGGPGAFSFR
HHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
VEAGGKDSRRHADRLKRYLQEELGVPAANVTAAVRPGTGASVLVVRR
EECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]